| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,758,841 – 24,758,937 |
| Length | 96 |
| Max. P | 0.521245 |
| Location | 24,758,841 – 24,758,937 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 76.98 |
| Mean single sequence MFE | -15.69 |
| Consensus MFE | -12.49 |
| Energy contribution | -12.38 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.72 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521245 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24758841 96 - 27905053 CCCUCGCAAA------------AAAAUGAGACCCCACCAUU-CUACUUAUCCUUGACUUGGCCCAAAUUGAGUUAUUAGAUGCUCAUUAUCGGCCAUUCCCGCUUGUCU ..((((....------------....))))...........-............(((.(((((.....(((((........))))).....))))).........))). ( -16.70) >DroPse_CAF1 9484 93 - 1 CGCCUCCAA---------------CCCCAUUUCCGACUGCU-CUUCUUAUCCUUGUCUUGGCCCAAAUUGAGUUAUUAGAUGCUCAUUAUCGGCCUUUGCCGAGUCUCU .........---------------.................-.........((((.(..((((.....(((((........))))).....))))...).))))..... ( -16.20) >DroSec_CAF1 9521 96 - 1 CCUUUGCAAA------------AAAAUGAGACCCCACCAUU-CUACUUAUCCUUGACUUGGCCCAAAUUGAGUUAUUAGAUGUUCAUUAUCGGCCAUUCCCGCUUGUCU ..........------------......((((.........-.....((((..(((((..(......)..)))))...))))........(((......)))...)))) ( -11.00) >DroEre_CAF1 9588 94 - 1 -CCUUGGAAA-------------AAAUGAGCCCCCACCAUU-CUACUUAUCCUUGACUUGGCCCAAAUUGAGUUAUUAGAUGCUCAUUAUCGGCCAUUCUCGCUUGUCU -.........-------------..(..(((..........-...(........)...(((((.....(((((........))))).....))))).....)))..).. ( -16.60) >DroYak_CAF1 9745 108 - 1 -UUUUAGAAAAAAAAAAAAACAAAAAUGAGCACCCACCAUUCCUACUUAUCCUUGACUUGGCCCAAAUUGAGUUAUUAGAUGCUCAUUAUCGGCCAUUCUCGCUUGUCU -........................(..(((..............(........)...(((((.....(((((........))))).....))))).....)))..).. ( -17.50) >DroAna_CAF1 10188 87 - 1 C---UCGUC-----------------CUCGCCCUCGUCCUC-GUUCUUAUCCUUGACUUGGCCCAAAUUGAGUUAUUAGAUGCUCAUUAUCGGUCAUUCCGGCUUGUC- .---.....-----------------...(((...(((...-............))).(((((.....(((((........))))).....)))))....))).....- ( -16.16) >consensus CCCUUGCAAA_____________AAAUGAGCCCCCACCAUU_CUACUUAUCCUUGACUUGGCCCAAAUUGAGUUAUUAGAUGCUCAUUAUCGGCCAUUCCCGCUUGUCU ..........................................................(((((.....(((((........))))).....)))))............. (-12.49 = -12.38 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:48 2006