Locus 9286

Sequence ID 3R_DroMel_CAF1
Location 24,749,952 – 24,750,042
Length 90
Max. P 0.587644
window14848

overview

Window 8

Location 24,749,952 – 24,750,042
Length 90
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 70.86
Mean single sequence MFE -26.37
Consensus MFE -10.06
Energy contribution -11.57
Covariance contribution 1.50
Combinations/Pair 1.29
Mean z-score -1.82
Structure conservation index 0.38
SVM decision value 0.11
SVM RNA-class probability 0.587644
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24749952 90 + 27905053
UCUCACGGAUUCUAGGUUAGAGCACAG--------------GAAAAAAGAUAGUU-------CCAGUGUAGAGGCCAAAGUGGACACAAAUGCCUCUGAUCAUGUGAGACG
(((((((((((..........((((.(--------------(((.........))-------)).))))((((((.....((....))...)))))))))).))))))).. ( -27.30)
>DroPse_CAF1 761 105 + 1
CCUCAGUGAGUCCCAGUUGCAGCGCCAACGGGGCCACCAGUACGACAAGAUCCGUACAUUUGCUAGUG------CGUCGGUGGCGGCGAAUGCCACGCCUACUGUGGAGCA
((.(((((...(((.((((......)))))))((((((.(((((........)))))....((....)------)...))))))((((.......))))))))).)).... ( -41.20)
>DroSec_CAF1 788 90 + 1
UCUCACGGAUUCUAGGUUAGAGCACAC--------------ACGAAAAGAAAGUU-------CCAGUGUAGAGGCCAAAGUGGAUACAAAUGCCUCUGAUCAUGUGAGACG
(((((((((((............((((--------------..(((.......))-------)..))))((((((.....((....))...)))))))))).))))))).. ( -23.20)
>DroSim_CAF1 783 90 + 1
UCUCACGGAUUCUAGGUUAGAGCACAC--------------ACGAAAAGAAAGUU-------CCAGUGUAGAGGCCAAAGUGGAUACAAAUGCCUCAGAUCAUGUGAGACG
(((((((...(((..........((((--------------..(((.......))-------)..)))).(((((.....((....))...))))))))...))))))).. ( -23.10)
>DroEre_CAF1 803 90 + 1
UCUCACGGAAUCAAGGUUAGAGCACAA--------------GAAAAUAGAAAGUU-------CUAGGGUAGAAGCCAAAGUGGAUACAAAUGCGUCUGAUCAUGUGAGGCG
(((((((....)..((((((((((...--------------.....((((....)-------)))..(((....((.....)).)))...))).)))))))..)))))).. ( -20.10)
>DroYak_CAF1 710 90 + 1
UCUCACGGAAACAAGGUUAGAGCACAG--------------AAAAAAAGAUAGUU-------AUAGUGUAGAAGCCAAUGUGGAUACAAAUGGUUCUGAUCAUGUGAGGCG
(((((((....)..(((((((((.((.--------------..............-------....((((....((.....)).))))..)))))))))))..)))))).. ( -23.30)
>consensus
UCUCACGGAUUCUAGGUUAGAGCACAA______________AAAAAAAGAAAGUU_______CCAGUGUAGAGGCCAAAGUGGAUACAAAUGCCUCUGAUCAUGUGAGACG
((((((((((.....((....)).............................................(((((((.....((....))...)))))))))).))))))).. (-10.06 = -11.57 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:45 2006