Locus 9282

Sequence ID 3R_DroMel_CAF1
Location 24,745,948 – 24,746,039
Length 91
Max. P 0.972542
window14841

overview

Window 1

Location 24,745,948 – 24,746,039
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 78.28
Mean single sequence MFE -26.28
Consensus MFE -18.17
Energy contribution -17.67
Covariance contribution -0.50
Combinations/Pair 1.27
Mean z-score -2.45
Structure conservation index 0.69
SVM decision value 1.69
SVM RNA-class probability 0.972542
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24745948 91 + 27905053
AAGAUCAUGGCCACACUGGGCGAGGGAACUUUUGGACGUGUGGUCAAGGUCAAAGAUAUGGAGCGGUAAGAAUUUCCAUACAAGAAAUAAA
..((((.(((((((((.(..(((((....)))))..)))))))))).)))).....(((((((..........)))))))........... ( -27.70)
>DroPse_CAF1 1 85 + 1
------AUGGCCACACUCGGCGAGGGCACUUUCGGACGUGUGGUCAAAGUCAAAGACAUGGAGCGGUAAGUCCUCGAAUCUAGCCUCUAGC
------.(((((((((((.(.(((....))).).)).)))))))))..(((...))).(((((.(.((..(......)..)).)))))).. ( -25.20)
>DroGri_CAF1 1 74 + 1
------AUGGCCACAUUGGGCGAGGGCACCUUCGGACGUGUGGUCAAGGUCAAAGACAUGGAGCGGUAAGUUC---AAUGAAA--------
------.(((((((((.(..(((((....)))))..))))))))))..........(((.((((.....))))---.)))...-------- ( -26.90)
>DroSim_CAF1 1 85 + 1
------AUGGCCACACUGGGCGAGGGAACUUUUGGACGUGUGGUCAAGGUCAAAGAUAUGGAGCGGUAAGAUUUUCCAUACAAGAACUAAA
------.(((((((((.(..(((((....)))))..))))))))))..........(((((((.(......).)))))))........... ( -22.30)
>DroYak_CAF1 1 85 + 1
------AUGGCCACACUGGGCGAAGGAACUUUUGGACGUGUGGUCAAGGUCAAAGAUAUGGAGCGGUAAGAUUUACCAUCUAUGAAGUAUA
------.(((((((((.(..(((((....)))))..))))))))))..........((((((..((((.....)))).))))))....... ( -26.10)
>DroMoj_CAF1 1 88 + 1
AAGAUCAUGGCCACACUGGGCGAGGGCACUUUCGGACGUGUGGUCAAGGUCAAAGACAUGGAACGGUAAGUAC---AAUGAAAUACCGAAA
..((((.(((((((((.(..(((((....)))))..)))))))))).))))............(((((..(..---....)..)))))... ( -29.50)
>consensus
______AUGGCCACACUGGGCGAGGGAACUUUCGGACGUGUGGUCAAGGUCAAAGACAUGGAGCGGUAAGAUCU_CAAUAAAAGAACUAAA
.......(((((((((.(..(((((....)))))..))))))))))............................................. (-18.17 = -17.67 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:38 2006