| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,743,713 – 24,743,806 |
| Length | 93 |
| Max. P | 0.665882 |
| Location | 24,743,713 – 24,743,806 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 78.53 |
| Mean single sequence MFE | -38.70 |
| Consensus MFE | -21.54 |
| Energy contribution | -22.23 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24743713 93 + 27905053 GGCUCCGGAUCGAGCUACCUCCAUGACUCAUAC------AGCGGGAGUAGUAGGCGAUCCAAUGCCCUGGG---AGGCAGCUCGUUGUAUCCGCAGCGAUCC .(((.(((((((((((.(((((........(((------.((....)).)))((((......))))...))---))).))))))....))))).)))..... ( -37.80) >DroSec_CAF1 18263 93 + 1 GGCUCCGGAUCGAGCUACCUCCAUGACUCGUAC------AGCGGGAGUAGUAGGCGAUCCAAUGCCCUGGC---AGGCAGCUCGUUGUAUCCUCAACGAUCC .(((((((((((.(((((..((.((.......)------)..))..)))))...))))))..(((....))---))).)))((((((......))))))... ( -35.70) >DroEre_CAF1 28007 96 + 1 GGCUCCGGAUCGAGCUACCUCCACGACUCGUAC------AGCGGGAGUAGUAGGCGAUCCAAUGCCCUGGGAGGAGGCAGCUCGUUGUAUCCCCAGCGAUCC ......((((((((((.(((((....(.(.(((------.((....)).))).).).((((......)))).))))).)))))((((......))))))))) ( -37.20) >DroYak_CAF1 17470 93 + 1 GGCUCUGGAUCGAGCUACCUCCACGACUCGUAC------AGCGGGAGUAGUAGGCGAUCCAAUGCCCUGGG---GGGCAGCUCGUUGUACCCCCAGCGAUCC (((..(((((((.(((((.(((.((.((.....------))))))))))))...)))))))..)))(((((---((((((....)))).)))))))...... ( -45.00) >DroMoj_CAF1 27422 84 + 1 ---AGCGGAUCGAGCUAUCUGCACGAGGGCUACG------GCAUCAGUGGGCGGCGCUCGAAUGCGCUG------GGCAGUUCGCUGUACC---AGCGACCG ---..(((.((((((...((((.((...((....------)).....)).)))).))))))...(((((------(((((....)))).))---)))).))) ( -37.30) >DroAna_CAF1 19867 99 + 1 ---UCCGGAUCGAGCUACCUCCAAGACUCGUACGGAAGCAGCAGCAGCAGCCGGCGCUCCAAUGCCCUGGGCCUGGGCUCCUCGCUGUAUCCGCAACGAUCC ---...((((((((((.......)).)))((.((((.(((((((.(((..((((.((.(((......)))))))))))).)).))))).))))..))))))) ( -39.20) >consensus GGCUCCGGAUCGAGCUACCUCCACGACUCGUAC______AGCGGGAGUAGUAGGCGAUCCAAUGCCCUGGG___AGGCAGCUCGUUGUAUCCCCAGCGAUCC ......((((((((((.((((((.................((....))....((((......)))).)))....))).)))))((((......))))))))) (-21.54 = -22.23 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:38 2006