Locus 9275

Sequence ID 3R_DroMel_CAF1
Location 24,732,291 – 24,732,389
Length 98
Max. P 0.560697
window14831

overview

Window 1

Location 24,732,291 – 24,732,389
Length 98
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 82.22
Mean single sequence MFE -39.45
Consensus MFE -24.66
Energy contribution -25.00
Covariance contribution 0.34
Combinations/Pair 1.39
Mean z-score -1.85
Structure conservation index 0.63
SVM decision value 0.05
SVM RNA-class probability 0.560697
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24732291 98 - 27905053
AAUUUGGUAGGCUGUGGAG---GUGCUGCCAUAAGUGGUGGUUCCACACCGGUGGCACUCGUGGUGCUACCACGUCGACUGCCUGCCUUGCUAGGUUGUCU
.....(((((((.((.(((---(.((..(((....)))..)).)).....((((((((.....))))))))...)).)).))))))).............. ( -43.80)
>DroSec_CAF1 6861 98 - 1
AAUUUGGUAGGCUGUGGAG---GUGCUGCCAUAAGUGGAGGCUCCACACCGGUGGUACUCGUAGUGCUACCACGUCGACUGCCUGCCUUGCUGGGUUGUCU
.....(((((((.((.(((---(.(((.(((....))).))).)).....((((((((.....))))))))...)).)).))))))).............. ( -40.60)
>DroSim_CAF1 6932 98 - 1
AAUUUGGUAGGCUGUGGAG---GUGCUGCCAUAAGUGGUGGCUCCACACCAGUGGCACUCGUAGUGCUACCACGUCGACUACCGGCCUUGCUGGGUUGUCU
.........((.(((((((---.(((..(.....)..))).))))))))).(((((((.....)))))))......(((..(((((...)))))...))). ( -41.00)
>DroEre_CAF1 16493 98 - 1
AAUUUGGUAGACUGGGAAG---GUGGUGCCAUAAGUGGUGGUUCCACACCUGUGGCACUCGUAGUGCUUCCACGUCGACUGUCUGCCUUGCUGGGUUGUCU
.....(..((.(..(.(((---((.((((((((.(((.((....))))).))))))))(((..(((....)))..)))......))))).)..).))..). ( -33.80)
>DroYak_CAF1 5745 101 - 1
AAUUUGGUAGGCUGGGGAGGAGGUGCUGCCAUAAGUGGUGGUUCCACACCGGUAGCACUCGUGGUGCUACCACGUCGACUGUCUGCCUUGCUGGGCUGUCU
.....(..((.(..(.((((((((((((((....((((.....))))...)))))))).(((((.....)))))........)).)))).)..).))..). ( -42.60)
>DroAna_CAF1 5954 87 - 1
AAUUUGGAAGCCAGAGGA------GCAGGCGGAGGUGGCGGCUCGACUCCCGAGGCACUGGAGGUGCUUCCGCGUCGACUAGUCGCCUUGCUG--------
..(((((...)))))...------...((((.(((((((...(((((..(.(((((((.....))))))).).)))))...))))))))))).-------- ( -34.90)
>consensus
AAUUUGGUAGGCUGUGGAG___GUGCUGCCAUAAGUGGUGGCUCCACACCGGUGGCACUCGUAGUGCUACCACGUCGACUGCCUGCCUUGCUGGGUUGUCU
.....(((((((.(........(((..(((((.....)))))..)))....(((((((.....)))))))........).))))))).............. (-24.66 = -25.00 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:30 2006