Locus 9273

Sequence ID 3R_DroMel_CAF1
Location 24,729,803 – 24,729,899
Length 96
Max. P 0.729706
window14828

overview

Window 8

Location 24,729,803 – 24,729,899
Length 96
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 94.11
Mean single sequence MFE -27.36
Consensus MFE -24.44
Energy contribution -24.32
Covariance contribution -0.12
Combinations/Pair 1.08
Mean z-score -1.26
Structure conservation index 0.89
SVM decision value 0.42
SVM RNA-class probability 0.729706
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24729803 96 - 27905053
UUUGGACGUUUCACAGCUGCUC-----AUCAGGCUGGAUGGUAUCCCACUUGAUAUUAUUCCGAAUUAUACACUCGCCACCAUUGGCGGG-GGGUCAAUAAA
....(((..(((.(((((....-----....)))))(((((((((......)))))))))..))).......(((((((....)))))))-..)))...... ( -27.80)
>DroSec_CAF1 4401 96 - 1
UUUGGACGUUUCACAGCUGCUC-----AUGAGGCUGGAUGGUAUCCCACUUGAUAUUAUUCCGAAUUAUACACUCGCCACCUUUGGCGGG-GGGUCAAUAAA
....(((..(((.(((((.(..-----..).)))))(((((((((......)))))))))..))).......(((((((....)))))))-..)))...... ( -27.90)
>DroSim_CAF1 4469 96 - 1
UUUGGACGUUUCACAGCUGCUC-----AUCAGGCUGGAUGGUAUCCCACUUGAUAUUAUUCCGAAUUAUACACUCGCCACCAUUGGCGGG-GGGUCAAUAAA
....(((..(((.(((((....-----....)))))(((((((((......)))))))))..))).......(((((((....)))))))-..)))...... ( -27.80)
>DroEre_CAF1 14001 101 - 1
UUUGGACGUUUCACAGCUGCUCAUCUCAUCUGGCUGGAUGGUAUCCCACUUGAUAUUAUUCCGAAUUAUACACUCGCCACCGUUGGCGGG-GGGUCAAUAAA
....(((..(((.(((((.............)))))(((((((((......)))))))))..))).......(((((((....)))))))-..)))...... ( -26.52)
>DroYak_CAF1 3247 97 - 1
UUUGGACGUUUCACAGCUGCUC-----AUCUGGCUGGAUGUUAUCCCACUUGAUAUUGUUCCAAAUUAUAAACUCGCCACCGUUGGCGGGGGGGUCAAUAAA
((((((.......(((((....-----....)))))(((((((.......)))))))..))))))((((..((((.((.(((....)))))))))..)))). ( -26.80)
>consensus
UUUGGACGUUUCACAGCUGCUC_____AUCAGGCUGGAUGGUAUCCCACUUGAUAUUAUUCCGAAUUAUACACUCGCCACCAUUGGCGGG_GGGUCAAUAAA
((((((.......(((((.............))))).((((((((......)))))))))))))).......(((((((....)))))))............ (-24.44 = -24.32 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:27 2006