Locus 9272

Sequence ID 3R_DroMel_CAF1
Location 24,726,161 – 24,726,275
Length 114
Max. P 0.911269
window14827

overview

Window 7

Location 24,726,161 – 24,726,275
Length 114
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 97.81
Mean single sequence MFE -39.85
Consensus MFE -39.33
Energy contribution -39.20
Covariance contribution -0.13
Combinations/Pair 1.06
Mean z-score -2.12
Structure conservation index 0.99
SVM decision value 1.08
SVM RNA-class probability 0.911269
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24726161 114 - 27905053
AAUCAAGUUAAUCAACUCGGCCGGAUGGCUACCUCAGCUGGUACUGUUACUGUUGGCUAUCUGGUUGGCAGCGGCCCACCUCUACCGUCGGCCAAAUGCCUUUGAGAGUACUUC
..............(((((((((((((((((.(.(((......))).....).)))))))))))))((((..((((.((.......)).))))...)))).....))))..... ( -38.30)
>DroSec_CAF1 804 114 - 1
AAUCAAGUUAAUCAACUCGGCCGGAUGGCUACCUCAGCUGGUACUGUUACUGUUGGCUAUCUGGCUGGCAGCGGCCCACCUCUACCGUCGGCCAAAUGCCUUUGAGAGUACUUC
..............(((((((((((((((((.(.(((......))).....).)))))))))))))((((..((((.((.......)).))))...)))).....))))..... ( -40.80)
>DroSim_CAF1 806 114 - 1
AAUCAAGUUAAUCAACUCGGCCGGAUGGCUACCUCAGCUGGUACUGUUACUGUUGGCUAUCUGGCUGGCAGCGGCCCACCUCUACCGUCGGCCAAAUGCCUUUGAGAGUACUUC
..............(((((((((((((((((.(.(((......))).....).)))))))))))))((((..((((.((.......)).))))...)))).....))))..... ( -40.80)
>DroEre_CAF1 10457 114 - 1
AAUCAAGUUAAUCAACUCGGCCGGAUGGCUACCUCAACUGGGACUGUUACUGUUGGCUAUCUGGCUGGCAGCGGCCCACCUCUACUGCCGGCCAAAUGCCUUUGAGAGUACUUC
..............((((((((((((((((.((......))(((.......)))))))))))))))((((..((((...(......)..))))...)))).....))))..... ( -39.50)
>consensus
AAUCAAGUUAAUCAACUCGGCCGGAUGGCUACCUCAGCUGGUACUGUUACUGUUGGCUAUCUGGCUGGCAGCGGCCCACCUCUACCGUCGGCCAAAUGCCUUUGAGAGUACUUC
..............(((((((((((((((((.(..(((.......)))...).)))))))))))))((((..((((.((.......)).))))...)))).....))))..... (-39.33 = -39.20 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:26 2006