| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,721,643 – 24,721,733 |
| Length | 90 |
| Max. P | 0.530297 |
| Location | 24,721,643 – 24,721,733 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 95.56 |
| Mean single sequence MFE | -22.13 |
| Consensus MFE | -18.25 |
| Energy contribution | -19.03 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.82 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.530297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24721643 90 + 27905053 UGACUUAAUUGCCGCAAAUAGCUCUUCCUGUUGAAAUAUUUUUAGGCAAUUAUGUCAGCAGCUGGCCAAAUGGAAUCCUCACUUUGUCAA ((((.((((((((..(((((..((........))..)))))...)))))))).)))).....((((.((.(((.....))).)).)))). ( -21.70) >DroSec_CAF1 23948 90 + 1 UGACAUAAUUGCCGCAAAUAGCUCUUCCUGCUGAAAUAUUUUUAGGCAAUUAUGUCAGCAGCUGGCCAAAUGGAAUCCUCACUUUGUCAA (((((((((((((..(((((..((........))..)))))...))))))))))))).....((((.((.(((.....))).)).)))). ( -26.00) >DroYak_CAF1 26067 90 + 1 UGACUUAAAUGCAGCGCAUAGCUCUUCCUGCUGAAAUAUUUUUAGGCAAUUAUGUCAGCAGCUGGCCAAAUGGAAUCCUCACUUUGUCAA ((((.......((((((.((((.......))))...........((((....)))).)).)))).((....))............)))). ( -18.70) >consensus UGACUUAAUUGCCGCAAAUAGCUCUUCCUGCUGAAAUAUUUUUAGGCAAUUAUGUCAGCAGCUGGCCAAAUGGAAUCCUCACUUUGUCAA ((((.((((((((..(((((..((........))..)))))...)))))))).)))).....((((.((.(((.....))).)).)))). (-18.25 = -19.03 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:25 2006