| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,715,377 – 24,715,477 |
| Length | 100 |
| Max. P | 0.661938 |
| Location | 24,715,377 – 24,715,477 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 76.95 |
| Mean single sequence MFE | -23.39 |
| Consensus MFE | -10.03 |
| Energy contribution | -10.11 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.661938 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24715377 100 - 27905053 ----ACACACAUUGUCAGUGGGUCUGUGGUACCAUUAGGAGACCUAUAAGUUUUAACUAUAGGC-UAU--AU-ACUACUGCCUAUAUGCGCAUAUAUGCAUGCACAUA ----.............((((((..((((((((....))((.((((((.((....)))))))))-)..--.)-))))).))))))(((.((((......)))).))). ( -26.10) >DroSec_CAF1 17647 104 - 1 GUAUACACACAUUGUCAGUGGGUCUGUAGUACCUAUAAGACACCUAUCACAUUUAUCUAUAGGC-UAU--AU-ACUACUGCCUAUAUGCGCAUAUAUGCAUGCACAUA .................((((((..((((((((((((.((...............)))))))).-...--.)-))))).))))))(((.((((......)))).))). ( -21.76) >DroSim_CAF1 7543 104 - 1 GUAUACACACAUUGUCAGUGGGUCUGUGGUACCUAUAGGACACCUAUCAGAUUUAUCUAUAGGC-UAU--AU-ACUACUGCCUAUAUGCGCAUAUAUGCAUGCACAUA .................((((((..((((((..(((((....(((((.(((....)))))))))-)))--))-))))).))))))(((.((((......)))).))). ( -25.90) >DroEre_CAF1 17590 95 - 1 GUAUACACACACUGUCAGUGGGUCUGUGGUACCUAUUGGACAGGUGUCAGAUUUAACUAUAGGC-AUUAUACUGCUGCUGCUUAUGUACGCAU------------AUA (..(((((((.(((((((((((((....).))))))).)))))))))...........((((((-(.((......)).))))))))))..)..------------... ( -27.20) >DroYak_CAF1 18866 95 - 1 GUAUACACACACUGUCAGUGGGUCUGUGUUACCUAUUAAACACCUAUCAGAUUUAACCAUAGACUGCUAUAC-ACAGCUACUUAUAUACGCAU------------AUA (((((........(((.(((((((((((((........))))).....))))....)))).))).(((....-..)))......)))))....------------... ( -16.00) >consensus GUAUACACACAUUGUCAGUGGGUCUGUGGUACCUAUAGGACACCUAUCAGAUUUAACUAUAGGC_UAU__AU_ACUACUGCCUAUAUGCGCAUAUAUGCAUGCACAUA .............((..((((((..(((((............(((((.((......)))))))..........))))).))))))..))................... (-10.03 = -10.11 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:24 2006