Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,114,432 – 3,114,548 |
Length | 116 |
Max. P | 0.939279 |
Location | 3,114,432 – 3,114,548 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.44 |
Mean single sequence MFE | -23.65 |
Consensus MFE | -21.43 |
Energy contribution | -21.18 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.16 |
Mean z-score | -1.79 |
Structure conservation index | 0.91 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939279 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3114432 116 - 27905053 GGUGGACUGUGUCUGUUAUUCCCCUCAUUUAAUUAACAAUAAAAAUAGGCUAAA-AAGUCUUAAAA---AAGCAAAAACUGCACGCGAAUUAUGCAGGCGCACACAAACAAGCCACACAC .((((..(((((((((.((((.........................(((((...-.))))).....---..(((.....)))....))))...)))))))))..........)))).... ( -24.10) >DroPse_CAF1 2007 115 - 1 GGCGGCUUGUGUCUGUUAUUCCCCUCAUUUAAUUAACAAUAAAAAUAGGCUAAAAAAGUCUAAAAAAUAAAGUAAAAACUGCCUGCGAAUUAUGCAUGCACACGCACA-----CGCACAC .(((((.(((((.(((.((((........................((((((.....))))))........(((....)))......))))...))).))))).))...-----))).... ( -21.30) >DroSim_CAF1 7463 116 - 1 GGUGGACUGUGUCUGUUAUUCCCCUCAUUUAAUUAACAAUAAAAAUAGGCUAAA-AAGUCUUAAAA---AAGCAAAAACUGCACGCGAAUUAUGCAGGCGCACACAAACAAGCCACGCAC .((((..(((((((((.((((.........................(((((...-.))))).....---..(((.....)))....))))...)))))))))..........)))).... ( -24.10) >DroPer_CAF1 2020 115 - 1 GGCGGCUUGUGUCUGUUAUUCCCCUCAUUUAAUUAACAAUAAAAAUAGGCUAAAAAAGUCUAAAAAAUAAAGUAAAAACUGCCUGCGAAUUAUGCAUGCACACGCACA-----CGCACAC .(((((.(((((.(((.((((........................((((((.....))))))........(((....)))......))))...))).))))).))...-----))).... ( -21.30) >DroEre_CAF1 2049 115 - 1 GGCGGACUGUGUCUGUUAUUCCCCUCAUUUAAUUAACAAUAAAAAUAGGCUAAA-AAGUCUUAAAA---AAGCAAAAACUGCACGCGAAUUAUGCAGGCGCACA-AAACACGCCGCGCAC ((((...(((((((((.((((.........................(((((...-.))))).....---..(((.....)))....))))...)))))))))..-.....))))...... ( -26.80) >DroYak_CAF1 5637 116 - 1 GGUGGACUGUGUCUGUUAUUCCCCUCAUUUAAUUAACAAUAAAAAUAGGCUAAA-AAGUCUUAAAA---AAGCAAAAACUGCACGCGAAUUAUGCAGGCGCACACAAACACGCCGCGCAC ((((...(((((((((.((((.........................(((((...-.))))).....---..(((.....)))....))))...)))))))))........))))...... ( -24.30) >consensus GGCGGACUGUGUCUGUUAUUCCCCUCAUUUAAUUAACAAUAAAAAUAGGCUAAA_AAGUCUUAAAA___AAGCAAAAACUGCACGCGAAUUAUGCAGGCGCACACAAACA_GCCGCACAC .((((..(((((((((.((((.........................(((((.....)))))..........(((.....)))....))))...)))))))))..........)))).... (-21.43 = -21.18 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:34 2006