| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,714,547 – 24,714,644 |
| Length | 97 |
| Max. P | 0.521571 |
| Location | 24,714,547 – 24,714,644 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 83.16 |
| Mean single sequence MFE | -14.72 |
| Consensus MFE | -12.73 |
| Energy contribution | -11.10 |
| Covariance contribution | -1.63 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.86 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521571 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24714547 97 - 27905053 UGGCCUACAACCAAUAAAA-GGGAUAAAAUUCCACAAAACCUUGCUUCUGGAAGCAAGAAUUGGAAAGUAACUUUUCUACUUUUAUAUAAGAUCUAAA (((.......)))((((((-((((......))).......(((((((....)))))))...(((((((....))))))))))))))............ ( -19.80) >DroSec_CAF1 16828 90 - 1 UGGCCUACAACCAAUAAAAAAGAAUACAAUAACACAAAACUUUGCUUCUGGGAGCAAAAACUGGAAAGUAACUGUUCUGCUCUAAUAUA--------A (((.......))).......((((((..............(((((((....))))))).(((....)))...))))))...........--------. ( -14.00) >DroSim_CAF1 6722 90 - 1 UGACCUACAACCAAUAAAAAAGAAUACAAUUCCACAAAACUUUGCUUCUGGGAGCAAAAACUGGAAAGUAACUGUUCUGCUCUAAUAUA--------A ....................((((((...(((((......(((((((....)))))))...)))))......))))))...........--------. ( -13.20) >DroEre_CAF1 16765 90 - 1 UGGCUUACAACCAAUAAAAAAGAAUACAAUGCCACAAAACCUUGCUUUUAGGAGUGAGAAUUGGAAAAUAACUGUUCUGCUUUGAUAUA--------A (((.......))).((((..((((((..((.(((......((..(((....)))..))...)))...))...))))))..)))).....--------. ( -11.90) >consensus UGGCCUACAACCAAUAAAAAAGAAUACAAUUCCACAAAACCUUGCUUCUGGGAGCAAAAACUGGAAAGUAACUGUUCUGCUCUAAUAUA________A ....................((((((..............(((((((....))))))).(((....)))...)))))).................... (-12.73 = -11.10 + -1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:23 2006