| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,708,665 – 24,708,784 |
| Length | 119 |
| Max. P | 0.907995 |
| Location | 24,708,665 – 24,708,784 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.15 |
| Mean single sequence MFE | -26.65 |
| Consensus MFE | -24.25 |
| Energy contribution | -24.37 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.907995 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24708665 119 + 27905053 UUCACUUUGUGAUUUUUAAGUU-UUGGAAGGGAUGAGCACUUCAGUAAUGGUUAAUAUCGGACUUAAUUCCAUAUUUUCUUAUCCCAUACCUCAACCUUAAUUCAUAAAGUGAUGUUGAA .(((((((((((...(((((((-..((..((((((((....(((....)))..(((((.(((......))))))))..))))))))...))..)).))))).)))))))))))....... ( -33.70) >DroSec_CAF1 11022 120 + 1 UUUUCUUUGUGAUUUCUAAGUUUUUGGAAGGGAUGAGCACUUCAGUAAUGGUUAAUAUCCGACCUAAUCCCAUAUUUUCUUAUCCAAUACCUCAACCUUAAUUCAUAAAGUGAUGUUAAA ....((((((((....((((.((..((...(((((((............((((.......))))..............)))))))....))..)).))))..)))))))).......... ( -20.97) >DroSim_CAF1 594 119 + 1 UUUACUUUGUGAUUUCUAAGUU-UUGGAAGGGAUGAGCACUUUAGUAAUGGUUAAUAUCCGACCUAAUCCCAUAUUUUCUUAUCCUAUACCUCAACCUUAAUUCAUAAAGUGAUGUUGAA .(((((((((((....((((((-..((..((((((((............((((.......))))..............))))))))...))..)).))))..)))))))))))....... ( -25.27) >consensus UUUACUUUGUGAUUUCUAAGUU_UUGGAAGGGAUGAGCACUUCAGUAAUGGUUAAUAUCCGACCUAAUCCCAUAUUUUCUUAUCCAAUACCUCAACCUUAAUUCAUAAAGUGAUGUUGAA .(((((((((((....((((.....((..((((((((............((((.......))))..............))))))))...)).....))))..)))))))))))....... (-24.25 = -24.37 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:22 2006