Locus 9267

Sequence ID 3R_DroMel_CAF1
Location 24,706,049 – 24,706,145
Length 96
Max. P 0.631350
window14822

overview

Window 2

Location 24,706,049 – 24,706,145
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 80.56
Mean single sequence MFE -29.10
Consensus MFE -20.12
Energy contribution -21.90
Covariance contribution 1.78
Combinations/Pair 1.04
Mean z-score -1.66
Structure conservation index 0.69
SVM decision value 0.20
SVM RNA-class probability 0.631350
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24706049 96 - 27905053
AAAUAUGGGACCCACGACCGAGCGGGUGAUAAGGAAGAUCUUGGGCAGCGCUUCCACCCCGUGCUGCACUGAAAGAAAUUUCAAACCCAUGCAUAC
...((((((((((.(......).)))).....((((..(((((((((((((.........))))))).))..))))..))))...))))))..... ( -31.90)
>DroSec_CAF1 8387 96 - 1
AAACAUGGGACCCACGACCAAGCGGGUGAUAAGGAAGUGCUGGGGCAGCGCUUCCACCCCGUGCUGCACUGAAAGAAACUUCAAGCUCAUACAUUC
...((((((((((.(......).)))).....((((((((((...))))))))))..))))))..((..((((......)))).)).......... ( -34.30)
>DroYak_CAF1 8404 90 - 1
GAGCAAGGGAGCCACGACCGAGCGGGUGAUAAGGUAGAGCUGGAACCGCGCUUCCAACCCGUGCAGCACUGAAAAUAAUUUCAA------ACAUAU
..(((.(((.(((.((......))))).....((..((((((....)).))))))..))).))).....(((((....))))).------...... ( -21.10)
>consensus
AAACAUGGGACCCACGACCGAGCGGGUGAUAAGGAAGAGCUGGGGCAGCGCUUCCACCCCGUGCUGCACUGAAAGAAAUUUCAA_C_CAUACAUAC
...((((((((((.(......).)))).....(((((.(((.....))).)))))..))))))......(((((....)))))............. (-20.12 = -21.90 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:22 2006