Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,700,911 – 24,701,004 |
Length | 93 |
Max. P | 0.845126 |
Location | 24,700,911 – 24,701,004 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 78.77 |
Mean single sequence MFE | -27.40 |
Consensus MFE | -16.36 |
Energy contribution | -17.03 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.15 |
Mean z-score | -1.97 |
Structure conservation index | 0.60 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24700911 93 + 27905053 AGAAGGACAGGAACUUGUAGCCACUGUCCCAGGGCAUCAGUCCGGGCACGAUGGCCAGGAUGUAGAAGAUGGGUAUGGCUAAA----AUGGUAA--------GAU ............(((..((((((.((.((((...(.((.((((.(((......))).))))...)).).))))))))))))..----..)))..--------... ( -27.30) >DroVir_CAF1 5224 100 + 1 AAAACGAAAGGAACUUGUAGCCACUGUCCCAUGGCAUCAGACCCGGCACAAUGGCCAGUAUAUAAAAUAUUGGUAUUGCUGCA----AAUAGAAGAUAUUAGC-A ....(....)...(((.((((((........))))..........((((((((.(((((((.....)))))))))))).))).----..)).)))........-. ( -23.00) >DroPse_CAF1 1222 95 + 1 AGAACGACAGAAACUUGUAGCCACUGUCCCAGGGCAUCAGACCGGGCACAAUGGCCAGUAUAUAGAUGAUGGGUAUGGCUGCA----AGAAG-AAA----AGA-G .............((((((((((.((.((((...((((..((.((.(.....).)).)).....)))).))))))))))))))----))...-...----...-. ( -31.30) >DroWil_CAF1 5598 100 + 1 AAAACGAUAGAAACUUGUAACCGCUGUCCCAGGGCAUCAGUCCAGGCACAAUCGCCAGUAUAUAGAAGAUGGGUAUUGCUGGGGGGUAGAGGAGAA----AGA-G .............(((....((.((..(((.((((....))))...........(((((((((.........))).)))))))))..)).))...)----)).-. ( -25.50) >DroAna_CAF1 1961 95 + 1 AGAACGAUAGAAACUUGUAGCCGCUGUCCCAGGGCAUCAGGCCGGGCACAAUUGCCAGGAUAUAGAAGAUAGGUAUGGCUGCAAAA-AGGGCAG--------G-G ..............((((((((((((((....(((.....))).((((....))))...........)))))...)))))))))..-.......--------.-. ( -26.00) >DroPer_CAF1 1210 96 + 1 AGAACGACAGAAACUUGUAGCCACUGUCCCAGGGCAUCAGACCGGGCACAAUGGCCAGUAUAUAGAUGAUGGGUAUGGCUGCA----AGAAAAAAA----AGA-G .............((((((((((.((.((((...((((..((.((.(.....).)).)).....)))).))))))))))))))----)).......----...-. ( -31.30) >consensus AGAACGACAGAAACUUGUAGCCACUGUCCCAGGGCAUCAGACCGGGCACAAUGGCCAGUAUAUAGAAGAUGGGUAUGGCUGCA____AGAAGAAAA____AGA_G ...............((((((((.((.((((.(((....).)).(((......))).............))))))))))))))...................... (-16.36 = -17.03 + 0.67)
Location | 24,700,911 – 24,701,004 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 78.77 |
Mean single sequence MFE | -22.27 |
Consensus MFE | -16.84 |
Energy contribution | -17.70 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.07 |
Mean z-score | -1.26 |
Structure conservation index | 0.76 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759658 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24700911 93 - 27905053 AUC--------UUACCAU----UUUAGCCAUACCCAUCUUCUACAUCCUGGCCAUCGUGCCCGGACUGAUGCCCUGGGACAGUGGCUACAAGUUCCUGUCCUUCU ...--------.......----............((((.......(((.(((......))).)))..))))....(((((((..((.....))..)))))))... ( -22.30) >DroVir_CAF1 5224 100 - 1 U-GCUAAUAUCUUCUAUU----UGCAGCAAUACCAAUAUUUUAUAUACUGGCCAUUGUGCCGGGUCUGAUGCCAUGGGACAGUGGCUACAAGUUCCUUUCGUUUU (-((.((((.....))))----.)))......................((((((((((.((((((.....))).))).))))))))))................. ( -25.20) >DroPse_CAF1 1222 95 - 1 C-UCU----UUU-CUUCU----UGCAGCCAUACCCAUCAUCUAUAUACUGGCCAUUGUGCCCGGUCUGAUGCCCUGGGACAGUGGCUACAAGUUUCUGUCGUUCU .-...----...-...((----((.((((((.((((.((((.....(((((.(.....).)))))..))))...))))...)))))).))))............. ( -25.60) >DroWil_CAF1 5598 100 - 1 C-UCU----UUCUCCUCUACCCCCCAGCAAUACCCAUCUUCUAUAUACUGGCGAUUGUGCCUGGACUGAUGCCCUGGGACAGCGGUUACAAGUUUCUAUCGUUUU .-...----.............(((((.......((((.((((......((((....))))))))..))))..)))))..((((((...........)))))).. ( -16.70) >DroAna_CAF1 1961 95 - 1 C-C--------CUGCCCU-UUUUGCAGCCAUACCUAUCUUCUAUAUCCUGGCAAUUGUGCCCGGCCUGAUGCCCUGGGACAGCGGCUACAAGUUUCUAUCGUUCU .-.--------((((...-....)))).....................((((..((((.((((((.....)))..)))))))..))))................. ( -18.20) >DroPer_CAF1 1210 96 - 1 C-UCU----UUUUUUUCU----UGCAGCCAUACCCAUCAUCUAUAUACUGGCCAUUGUGCCCGGUCUGAUGCCCUGGGACAGUGGCUACAAGUUUCUGUCGUUCU .-...----.......((----((.((((((.((((.((((.....(((((.(.....).)))))..))))...))))...)))))).))))............. ( -25.60) >consensus C_UCU____UUUUCCUCU____UGCAGCCAUACCCAUCUUCUAUAUACUGGCCAUUGUGCCCGGUCUGAUGCCCUGGGACAGUGGCUACAAGUUUCUGUCGUUCU ................................................((((((((((.((.((.(....).)).)).))))))))))................. (-16.84 = -17.70 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:21 2006