| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,694,721 – 24,694,814 |
| Length | 93 |
| Max. P | 0.665449 |
| Location | 24,694,721 – 24,694,814 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 85.80 |
| Mean single sequence MFE | -22.28 |
| Consensus MFE | -18.15 |
| Energy contribution | -18.32 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665449 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24694721 93 + 27905053 AAUGCCGGCAUCUGCAAUAGCC---UCAUCCACAUCUAGUCAUCAGCACGAUGGCGGCACUUUUUGAGUUACAAUAUGUCGCUGCCAUCAUCCACC ..(((.(((..........)))---......((.....)).....))).(((((((((((...(((.....)))...)).)))))))))....... ( -22.30) >DroSec_CAF1 16145 92 + 1 -AUGCCGGCAUCUGCAAUAGCC---UCAUCCUCAUCUAGUCAUCAGCACGAUGGCGGCACUUUUUGAGUUACAAUAUGUCGCUGCCAUCAUCCACC -.....(((..........)))---........................(((((((((((...(((.....)))...)).)))))))))....... ( -22.10) >DroEre_CAF1 16167 93 + 1 ACUGCCAGCAUCUGCAAUAGCC---UCAUCUUCAUCUAGUCAUCAGCACGAUGGCGGCACUUUUUGAGUUACAAUAUGUCGCUGCCAUCAUCCACC .......((....))....((.---....((......))......))..(((((((((((...(((.....)))...)).)))))))))....... ( -20.80) >DroWil_CAF1 18048 91 + 1 --GUCAGGCGAUUGCAGCGACA---ACAUCUUCAUCGAAUCACCCACACGAUGGCGGCACUUUUUGAGUUACAAUAUGUCGCUGCCAGCAUCCACC --.....((....(((((((((---.......(((((...........)))))(..((.(.....).))..)....)))))))))..))....... ( -24.30) >DroYak_CAF1 16302 93 + 1 ACUACCGGCAUCUGCAAUCGCC---ACAUCUUCAUCUAGUCAUCAGCACGAUGGCGGCACUUUUUGAGUUACAAUAUGUCGCUGCCAUCAUCCACC ......(((..........)))---........................(((((((((((...(((.....)))...)).)))))))))....... ( -22.60) >DroAna_CAF1 16280 90 + 1 A------UCAUCCACAACCGCCGUUGCAUCUUCAUCUAGUCACCAGCACGAUGGCGGCACUUUUUGAGUUACAAUAUGUCGCUGCCAUCAUCCACC .------...............((((...((......))....))))..(((((((((((...(((.....)))...)).)))))))))....... ( -21.60) >consensus A_UGCCGGCAUCUGCAAUAGCC___UCAUCUUCAUCUAGUCAUCAGCACGAUGGCGGCACUUUUUGAGUUACAAUAUGUCGCUGCCAUCAUCCACC .................................................(((((((((((...(((.....)))...)).)))))))))....... (-18.15 = -18.32 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:19 2006