| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,684,021 – 24,684,111 |
| Length | 90 |
| Max. P | 0.815275 |
| Location | 24,684,021 – 24,684,111 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 83.89 |
| Mean single sequence MFE | -32.30 |
| Consensus MFE | -23.02 |
| Energy contribution | -25.90 |
| Covariance contribution | 2.88 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.97 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24684021 90 + 27905053 AGCGAAACGCACACAGCAACACUGCGCCGCACGCAGGGCGCAUAGAGUCGUCUCUGUCGCACGCAUACGAGCGGCAAUUAAAGUCGCAAA .(((....((.....))....(((((.....))))).(((.((((((....))))))))).)))......(((((.......)))))... ( -31.20) >DroPse_CAF1 5603 76 + 1 ----AGAUACACACACCGACA----------GGGACAGACCAUAGAGUUGUCUCUGUUGCACUCAUGGGAAUGGCAAUUAAAGUCAAAAA ----............(((((----------(((((((.(......)))))))))))))............((((.......)))).... ( -17.30) >DroSec_CAF1 5412 90 + 1 AGCGAAACGCACACAGCAACACUGCGCCGCACGCAGGGCGCAUAGAGUCGUCUCUGUCGCACGCAUGCGAGCGGCAAUUAAAGUCGCAAA .((((..........(((....)))(((((.((((..(((.((((((....))))))))).....)))).)))))........))))... ( -37.40) >DroSim_CAF1 5358 90 + 1 AGCGAAACGCACACAGCAACACUGCGCCGCACGCAGGGCGCAUAGAGUCGUCUCUGUCGCACGCAUGCGAGCGGCAAUUAAAGUCGCAAA .((((..........(((....)))(((((.((((..(((.((((((....))))))))).....)))).)))))........))))... ( -37.40) >DroEre_CAF1 5454 90 + 1 AGCGAAACGCACACAGCCACACUGCGCCGCACGCAGGGCGCAUAGAGUCGUCUCUGUCGCACGCAUGCGCGCGGCAAUUAAAGUCGCAAA .((((...(((...........)))(((((.((((..(((.((((((....))))))))).....)))).)))))........))))... ( -37.00) >DroYak_CAF1 5574 82 + 1 AGCGAAACGCACACA----C----AGCCGCACGCAGGGCGCAUAGAGUCGUCUCUGUCGCACGCAUGCGCGCGGCAAUUAAAGUCGCAAA .((((...(......----)----.(((((.((((..(((.((((((....))))))))).....)))).)))))........))))... ( -33.50) >consensus AGCGAAACGCACACAGCAACACUGCGCCGCACGCAGGGCGCAUAGAGUCGUCUCUGUCGCACGCAUGCGAGCGGCAAUUAAAGUCGCAAA .((((..........((......))(((((.(((((.(.((((((((....)))))).)).).).)))).)))))........))))... (-23.02 = -25.90 + 2.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:14 2006