Locus 9261

Sequence ID 3R_DroMel_CAF1
Location 24,681,354 – 24,681,455
Length 101
Max. P 0.582107
window14812

overview

Window 2

Location 24,681,354 – 24,681,455
Length 101
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 71.35
Mean single sequence MFE -13.52
Consensus MFE -0.46
Energy contribution -1.50
Covariance contribution 1.04
Combinations/Pair 1.17
Mean z-score -1.54
Structure conservation index 0.03
SVM decision value 0.10
SVM RNA-class probability 0.582107
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24681354 101 + 27905053
--------CUCCUAUGGAUUUCAAAAUAAAUCCACAGCGAUGUAAACAAUUCAAAUUGUAAAUCUUUCCUAAGUACUGCGUACAU-------AUAUUACUUCGAGCGUCACUCACC
--------...((.(((((((......))))))).)).((.(((((((((....))))).............((((...))))..-------...)))).))(((.....)))... ( -15.50)
>DroSec_CAF1 2764 101 + 1
--------CUCCUAUGGAUUUCAAAAUAAAUCCACAGCGAUGUAAACAAUUCAAAUUGUAAAUCCUUCCCAAGUACUUCUUACAA-------AUAUUACUUCGAGCUUCACUCACC
--------...((.(((((((......))))))).)).((.(((((((((....))))).............(((.....)))..-------...)))).))(((.....)))... ( -13.60)
>DroSim_CAF1 2731 89 + 1
--------CUCCUAUGGAUUUCAUAG------------GAUGUAAACAAUUCAAAUUGUAAAUCUUUCCCAAGUACUUCUUACAA-------AUAUUACUUCGCGCUUCACUCACC
--------.(((((((.....)))))------------)).(((((((((....))))).............(((.....)))..-------...))))................. ( -11.20)
>DroEre_CAF1 2741 107 + 1
UUCAAAAACACAUAUGGAUUUCAAAAUAAAUCUUCAGCGGUAUAAACCAUUCA----CUAAAUCUUGCCCAAGGGCUUUAUAUAU-----AUAUAUUUCAUUGAUCCUCACUCACC
...............(((((...(((((..........(((....))).....----.........(((....))).........-----...)))))....)))))......... ( -13.70)
>DroYak_CAF1 2782 112 + 1
UUGAAAAAGUCAUAUGGAUUUCCAAAUAAAUCUUGAGCGAUGUAAACCAUUCA----CUAAAUCUAGACUUAGUGCUUCUUAUAUAUAGUAUAUAUAUCUUCGAUCUCCACUCACC
.(((..........(((....)))........(((((.((((((.......((----((((........)))))).....(((((...)))))))))))))))).......))).. ( -13.60)
>consensus
________CUCCUAUGGAUUUCAAAAUAAAUCCACAGCGAUGUAAACAAUUCAAAUUGUAAAUCUUUCCCAAGUACUUCUUACAU_______AUAUUACUUCGAGCUUCACUCACC
...............((((((......))))))................................................................................... ( -0.46 =  -1.50 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:13 2006