Locus 9257

Sequence ID 3R_DroMel_CAF1
Location 24,674,926 – 24,675,031
Length 105
Max. P 0.999497
window14803

overview

Window 3

Location 24,674,926 – 24,675,031
Length 105
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.26
Mean single sequence MFE -24.50
Consensus MFE -20.64
Energy contribution -20.68
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -3.22
Structure conservation index 0.84
SVM decision value 3.66
SVM RNA-class probability 0.999497
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24674926 105 + 27905053
ACAAAAUGCAAACAGUAACAAAAAACAAACGGGUGUACAAGCACUCAAUUGAGUGGCAUAUAUGAAAUGCAUUUAAUUAC---------------AUCGGCAGAUACAAAAUGCAUAUAA
.....(((((....(((.(...........((((((....))))))(((((((((.(((.......))))))))))))..---------------.......).)))....))))).... ( -20.40)
>DroSec_CAF1 15938 105 + 1
ACAAAAUGCAAACAGUAACAAAAAACAAACGGGUGUGCAAGCUCUCAAUUGAGUGGCAUAUAUGAAAUGCAUUUAAUUAC---------------AUCGAGAGAUACAAAAUGCAUAUAA
.....(((((....((((..(((..((..((.((((((..((((......)))).)))))).))...))..)))..))))---------------(((....)))......))))).... ( -20.70)
>DroSim_CAF1 15987 105 + 1
ACAAAAUGCAAACAGUAACAAAAAACAAACGGGUGUGCGAGCACUCAAUUGAGUGGCAUAUAUGAAAUGCAUUUAAUUAC---------------AUCGAGAGAUACAAAAUGCAUAUAA
.....(((((....((((............((((((....))))))..(((((((.(((.......))))))))))))))---------------(((....)))......))))).... ( -22.50)
>DroEre_CAF1 17431 120 + 1
ACAAAAUGCAAACAGUAACAGAAAACAAACGGGUGUGCAAGCACUCAAUUGAGUGGCAUAUAUGAAAUGCAUUUAAUUACAGCACGGCCAGCCACAUCGGGAGAUACAAAAUGCAUAUAA
.....(((((....................((.(((((...(((((....)))))((((.......))))...........))))).))......(((....)))......))))).... ( -29.40)
>DroYak_CAF1 16409 120 + 1
ACAAAAUGCAAACAGUAACAGAAAACAAACGAGUGUGCAAGCACUCAAUUGAGUGGCAUAUAUGAAAUGCAUUUAAUUACAGCACUGCCCGCCACAUCGGGAGAUACAAAAUGCAUAUAA
.....(((((..((((..............((((((....))))))(((((((((.(((.......)))))))))))).....))))((((......))))..........))))).... ( -29.50)
>consensus
ACAAAAUGCAAACAGUAACAAAAAACAAACGGGUGUGCAAGCACUCAAUUGAGUGGCAUAUAUGAAAUGCAUUUAAUUAC_______________AUCGGGAGAUACAAAAUGCAUAUAA
.....(((((....................((((((....))))))(((((((((.(((.......)))))))))))).................(((....)))......))))).... (-20.64 = -20.68 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:05 2006