| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,674,401 – 24,674,508 |
| Length | 107 |
| Max. P | 0.931287 |
| Location | 24,674,401 – 24,674,508 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.47 |
| Mean single sequence MFE | -25.74 |
| Consensus MFE | -24.98 |
| Energy contribution | -25.18 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.97 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.931287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24674401 107 + 27905053 AUUUAUUUUCCGAU-----UCGAGUGGUGCGUACGGA----ACACUCGUCCAUUUCAGUUGUACUUCCAUAAUUCGUCUUUAACGAUUUAUUUAUGAAUUGCCAUUUGCGGGACAC---- .......(((((..-----.((((((((.((((.(((----(.....((.((.......)).))))))((((.((((.....)))).)))).))))....)))))))))))))...---- ( -21.00) >DroSec_CAF1 15414 107 + 1 AUUUAUUUUCCGAU-----UCGAGUGGUGCGUACGGA----ACACUCGUCCAUUUGAGUUGUACUUCCAUAAUUCGUCUUUAACGAUUUAUUUAUGAAUUGCCAUUUGCGGGACAC---- .......(((((..-----.((((((((.((((.(((----(((((((......)))).)))...)))((((.((((.....)))).)))).))))....)))))))))))))...---- ( -26.30) >DroSim_CAF1 15459 107 + 1 AUUUAUUUUCCGAU-----UCGAGUGGUGCGUACGGA----ACACUCGUCCAUUUGAGUUGUACUUCCAUAAUUCGUCUUUAACGAUUUAUUUAUGAAUUGCCAUUUGCGGGACAC---- .......(((((..-----.((((((((.((((.(((----(((((((......)))).)))...)))((((.((((.....)))).)))).))))....)))))))))))))...---- ( -26.30) >DroEre_CAF1 16901 107 + 1 AUUUAUUUUCCGAU-----UCGAGUGGUGCGUAUGGA----ACACUCGUCCAUUUGAGUUGUACUUCCAUAAUUCGUCUUUAACGAUUUAUUUAUGAAUUGCCAUUUGCGGGACAC---- .......(((((..-----.((((((((...((((((----(((((((......)))).)))...))))))..((((.....))))..............)))))))))))))...---- ( -26.60) >DroYak_CAF1 15859 120 + 1 AUUUAUUUUCCGAUUCGAUUCGAGUGGUGCGUAUGGAACGAACACUCGUCCAUUUGAGUUGUACUUCCAUAAUUCGUCUUUAACGAUUUAUUUAUGAAUUGCCAUUUGCGGGACACACGG .........(((...((((((((((((.(((..((.......))..)))))))))))))))...((((((((.((((.....)))).)))).........((.....))))))....))) ( -28.50) >consensus AUUUAUUUUCCGAU_____UCGAGUGGUGCGUACGGA____ACACUCGUCCAUUUGAGUUGUACUUCCAUAAUUCGUCUUUAACGAUUUAUUUAUGAAUUGCCAUUUGCGGGACAC____ .......(((((........((((((((.((((.(((....(((((((......)))).)))...)))((((.((((.....)))).)))).))))....)))))))))))))....... (-24.98 = -25.18 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:04 2006