Locus 9251

Sequence ID 3R_DroMel_CAF1
Location 24,671,996 – 24,672,116
Length 120
Max. P 0.620524
window14789

overview

Window 9

Location 24,671,996 – 24,672,116
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.32
Mean single sequence MFE -34.02
Consensus MFE -28.74
Energy contribution -29.74
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.31
Structure conservation index 0.84
SVM decision value 0.18
SVM RNA-class probability 0.620524
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24671996 120 - 27905053
ACAGCCGAGCGCUGUGCGGGAAAACUGAGCGCGCGGAAAACUGUGUGUAUAAACACAUCAAAUCGCAGCGCAGCGGCAGCAACAACAAACAGGGAAAUCUCUUUGAGAUACACUACACGC
...((((.(((((((((((.....))).((((((((....))))))))...............))))))))..))))............((((((....))))))............... ( -37.70)
>DroSec_CAF1 13073 120 - 1
ACAGCCGAGCGCUGUGCGGGAAAACUGAGCGCGGGGAAAACUGUGUGUAUAAACACACCAAAGGGCACCGCUCUGGCAGCAUCAAGAUACAUGGAAAUCUCUUUGAGAUACACUACACGC
...(((((((.((((((.((....))..))))))((....((((((((....))))))...))....)))))).)))...................(((((...)))))........... ( -31.50)
>DroSim_CAF1 13074 120 - 1
ACAGCCGAGCGCUGUGCGGGAAAACUGAGCGCGGGGAGAACUGUGUGUAUAAACACAUCAAAUCGCAGCGCGGCGGCAGCAACAACAAACAGGGAAAUCUCUUUGAGAUACACUACACGC
...((((.(((((((((((.....))).((((((......)))))).................))))))))..))))............((((((....))))))............... ( -37.00)
>DroEre_CAF1 14610 117 - 1
ACAGCCGAGCGCUGUGCGGAAAAACUGAGCGCGGGGAAAACUGUGUGUAUAAACACAUCAAAUCGCAGCGC---GGCAGCAACAACAAACACGGAAAUCUCUUUGAGAUACACUACACGA
...(((..(((((((((((.....))).((((((......)))))).................))))))))---)))...................(((((...)))))........... ( -29.50)
>DroYak_CAF1 13288 117 - 1
ACAGCCGUGCGCUGUGCGGGAAAACUGAGCGCGGGGAAAACUGUGUGUAUAAACACAUCAAAUCGCAGCGC---GGCAGCAACAACAAACAGGGAAAUCUCUUUGAGAUACACUACACGC
...((((((((((...(((.....))))))((((.((....(((((......)))))))...)))).))))---)))............((((((....))))))............... ( -34.40)
>consensus
ACAGCCGAGCGCUGUGCGGGAAAACUGAGCGCGGGGAAAACUGUGUGUAUAAACACAUCAAAUCGCAGCGC___GGCAGCAACAACAAACAGGGAAAUCUCUUUGAGAUACACUACACGC
...(((..(((((((((((.....))).((((((......)))))).................))))))))...)))............((((((....))))))............... (-28.74 = -29.74 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:53 2006