Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,112,219 – 3,112,317 |
Length | 98 |
Max. P | 0.602833 |
Location | 3,112,219 – 3,112,317 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 87.01 |
Mean single sequence MFE | -36.60 |
Consensus MFE | -30.22 |
Energy contribution | -29.90 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.20 |
Mean z-score | -1.80 |
Structure conservation index | 0.83 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602833 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3112219 98 - 27905053 CCCGACACCUCAGGCUGGCCAUGGCGAAGCGGAUCCUGGAAGAAGACCAGGGACACGC-------GGUUAGGGAGGUAAAUGCUGGUCAGAGAGGGUUGGGAUGU ((((((.((((...((((((.((((...((((.((((((.......)))))).).)))-------.))))....(((....))))))))).)))))))))).... ( -41.60) >DroSim_CAF1 5233 98 - 1 CCCGACACCGCAGGCUGGCCAUGGCGAAGCGGAUCCUGGAAGAAGACCAGGGACACGC-------GGUUAGGGAGGGAAAUGCUGGUCAGAGAGGGUUGGGAUGU ((((((.((.....((((((.((((...((((.((((((.......)))))).).)))-------.))))((.(......).))))))))...)))))))).... ( -36.90) >DroYak_CAF1 3404 105 - 1 CCCGACACCGCAGGCUGGCCAUGGCGAAGCGGAUUCUGGAAGAAGACCAGGAACACGCUUGGGGAGAUUAGCAAGGGAAAUGUUGGCUUGAGAGGGUAUGGAUGU .(((((.((.(((((..((.....(.((((((.((((((.......)))))).).))))).)...(.....).........))..)))))...)))).))).... ( -31.30) >consensus CCCGACACCGCAGGCUGGCCAUGGCGAAGCGGAUCCUGGAAGAAGACCAGGGACACGC_______GGUUAGGGAGGGAAAUGCUGGUCAGAGAGGGUUGGGAUGU ((((((.((.....(((((((..((...((((.((((((.......)))))).).)))........(((.........))))))))))))...)))))))).... (-30.22 = -29.90 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:32 2006