Locus 9248

Sequence ID 3R_DroMel_CAF1
Location 24,669,035 – 24,669,132
Length 97
Max. P 0.549893
window14781

overview

Window 1

Location 24,669,035 – 24,669,132
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 87.11
Mean single sequence MFE -15.80
Consensus MFE -10.96
Energy contribution -11.60
Covariance contribution 0.64
Combinations/Pair 1.14
Mean z-score -1.77
Structure conservation index 0.69
SVM decision value 0.03
SVM RNA-class probability 0.549893
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24669035 97 - 27905053
CAAAUUAGGUAUUCAUAUGUCGGUUUAAAAUAACUUUUAAGACCUUACCCUCUAUAAGGUGAUGAAGCUUUAUCUUUCAAAAUCCAAAUCUGAUCCA
...(((((((...........(((((.(((.....))).)))))(((((........)))))(((((.......)))))........)))))))... ( -12.60)
>DroSec_CAF1 10032 97 - 1
CAAAAUAGGCAUUCAUAUGUCGGUUUAAAAUCACUUUUAAGACCUUACUCUCUAUAAGGUGAUGAAGCCUAAUCUUUCAAAAUCCAAAUCUGAACUA
.......(((((....)))))(((((...((((((((..(((........)))..)))))))).)))))............................ ( -18.80)
>DroSim_CAF1 10028 97 - 1
CAAAAAAGACAUUCAUAUGUCGGUUUAAAAUCACUUUUAAGACCUUACUCUCUAUAAGGUGAUGAAGCCAAAUCUUUCAAAAUCCAAAUCUGAUCAU
.......(((((....)))))(((((...((((((((..(((........)))..)))))))).)))))............................ ( -19.90)
>DroEre_CAF1 11538 96 - 1
CAAAAAAGGUAAUCACAUGUCGGUUUGAAAUCACUUUUAAGACCUCAACCUCUAUAAGGUUAUGAAGCCU-AUCUCUUAAAAUCCAAAUCUGAUCCA
......((((..(((......(((((.(((.....))).)))))..(((((.....))))).))).))))-.......................... ( -12.80)
>DroYak_CAF1 10088 95 - 1
CAAAAAAGGUAAUCACAUGUCGGGUUAAAAUCACUUUUAUGACCUUACCCUCUAUAAGGUGAUGAAGCCUAAUCUCUUAAAAUCCAAAUCUCUUU--
.......((.........((..((((...((((((((...((........))...))))))))..))))..))..........))..........-- ( -14.91)
>consensus
CAAAAAAGGUAUUCAUAUGUCGGUUUAAAAUCACUUUUAAGACCUUACCCUCUAUAAGGUGAUGAAGCCUAAUCUUUCAAAAUCCAAAUCUGAUCCA
.......(((((....)))))(((((...((((((((..(((........)))..)))))))).)))))............................ (-10.96 = -11.60 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:46 2006