Locus 9247

Sequence ID 3R_DroMel_CAF1
Location 24,663,286 – 24,663,393
Length 107
Max. P 0.557864
window14780

overview

Window 0

Location 24,663,286 – 24,663,393
Length 107
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 82.57
Mean single sequence MFE -42.89
Consensus MFE -26.53
Energy contribution -26.78
Covariance contribution 0.25
Combinations/Pair 1.32
Mean z-score -2.00
Structure conservation index 0.62
SVM decision value 0.05
SVM RNA-class probability 0.557864
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24663286 107 + 27905053
UCCUCGAAAACGCUGCGUAAUGGUUGUAGGCUGGCCGGGAUUACAACCGGUGGAGAAUCGACAUUCU------GCCCCGAACCAGCGACACUAUUUCGUCGUGGAGAUUGGGG
.((((((...(((.(((.((((((.((..(((((((((........)))).(((((((....)))))------.)).....))))).)))))))).))).)))....)))))) ( -37.70)
>DroSec_CAF1 4337 107 + 1
UCCUCGAAAACGCUGCGUAAUGGUUGUAGGCUGGCCGGGAUUACAACCGGGGGAGAAUCCACAUUCU------GCCCCGAACCAGCGACACUAUUUCGCCGUGGAGAUUGGGG
.((((((...(((.(((.((((((.((..(((((..((........))((((.(((((....)))))------.))))...))))).)))))))).))).)))....)))))) ( -45.00)
>DroSim_CAF1 4338 107 + 1
UCCUCGAAAACGCUGCGUAAUGGUUGUAGGCUGGCCGGGAUUACAACCGGUGGAGAAUCCACAUUCU------GUCCUGAACCAGCGACACUAUUUCGCCGUGGAGAUUGGGG
.((((((...(((.(((.((((((.((..(((((.((((((........((((.....)))).....------))))))..))))).)))))))).))).)))....)))))) ( -41.92)
>DroEre_CAF1 5841 107 + 1
UCCUCGAAAACGCUGCGAAGUGGUUGAAGGCUGGCCGGGAUUACAACCGGUGGAGAAUCCACAUUCU------GUCCCGAACCAGCGACACUAUGUCGCCGUGGAGAUUCAGG
.(((.(((..(((.((((.(((((.(...(((((.((((((........((((.....)))).....------))))))..)))))..)))))).)))).)))....)))))) ( -39.52)
>DroYak_CAF1 4351 107 + 1
UCCUCGAAAACGCUGCGAAGUGGUUGCAGGCUGGCCGGGAUAACAACCGGUGGAGAAUCCACAUUCU------GCCCGGAACCAGCGGCACUAUUUCGCCGUGGAGAUUGAGG
.((((((...(((.((((((((((.((..((((((((((..........((((.....)))).....------.)))))..))))).)))))))))))).)))....)))))) ( -50.79)
>DroAna_CAF1 6464 113 + 1
UCUUCAAAGACACUGCGCAGGGGCCGGUGGUUAGCUGGGACGGAAGCGGAGGCUGCGUCCACAUUUACCCCAGACCCCGAACCAGCUACACUGUUCCUUCGGGGCGAUUGCGG
...............((((((((.((((.....))))(((((..(((....))).))))).......)))).(.(((((((..(((......)))..))))))))...)))). ( -42.40)
>consensus
UCCUCGAAAACGCUGCGUAAUGGUUGUAGGCUGGCCGGGAUUACAACCGGUGGAGAAUCCACAUUCU______GCCCCGAACCAGCGACACUAUUUCGCCGUGGAGAUUGGGG
.((((((...(((.(((.((((((.((..(((((((((........))))...(((((....)))))..............))))).)))))))).))).)))....)))))) (-26.53 = -26.78 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:45 2006