| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,661,338 – 24,661,429 |
| Length | 91 |
| Max. P | 0.821905 |
| Location | 24,661,338 – 24,661,429 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 81.05 |
| Mean single sequence MFE | -29.57 |
| Consensus MFE | -20.17 |
| Energy contribution | -19.78 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.37 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.821905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24661338 91 - 27905053 UACUGGGUCUAAG---GACUUGGAUUCGGAAGAUCGAUCCAGCGAUGAAUCAAAUCAGUCCUUCAUCAUGGAAACCAUGGUCAGGUUGGACA---GU ......(((((((---(((((((((((....))...)))))..(((.......))))))))...(((((((...)))))))....)))))).---.. ( -26.80) >DroPse_CAF1 5161 91 - 1 UAUUGGGUCUAAGCUAGAGUUGGACUCU---GAUCGAUCCAGCGAUGAGUCCAACCAAUCCUUUAUUAUGGAGACCGUGGUACGACUGGACA---GU ......(((((..(..(.(((((((((.---.((((......)))))))))))))).......((((((((...)))))))).)..))))).---.. ( -28.00) >DroEre_CAF1 3639 91 - 1 UACUGGGUCUAAG---GACUUGGACUCGGAAGAUCGAUCCAGCGAUGAAUCCAAUCAGUCCUUCAUCAUGGAGACCAUGGUCAGGUUGGAUA---CU ..((((((((((.---...))))))))))...((((......))))..((((((((..(((........)))(((....))).)))))))).---.. ( -32.20) >DroYak_CAF1 2389 91 - 1 UACUGGGUCUAAG---GACUUGGACUCGGAAGAUCGUUCCAGCGAUGAAUCGAAUCAGUCCUUCAUCAUGGAGACCAUGGUCAGGUUGGACA---GU ..((((((((((.---...))))))))))......((.(((((((((((..((.....)).)))))).....(((....)))..))))))).---.. ( -30.40) >DroAna_CAF1 4693 94 - 1 UAUUGGGUCUAGG---GAGCUGGACUCAGAGGAUCGCUCCAGUGACGAGUCAAACCAAUCAUUUAUCAUGGACACAAUGGUAAGGUUGGACCAGGUU ..((((((((((.---...)))))))))).((.((((....)))).........((((((..(((((((.......))))))))))))).))..... ( -30.20) >DroPer_CAF1 5511 91 - 1 UAUUGGGUCUAAGCUGGAGUUGGACUCU---GAUCGAUCCAGCGAUGAGUCCAACCAAUCCUUUAUUAUGGACACCGUGGUACGACUGGACA---GU ......(((((..(.((((((((((((.---.((((......)))))))))))))...)))..((((((((...)))))))).)..))))).---.. ( -29.80) >consensus UACUGGGUCUAAG___GACUUGGACUCGGAAGAUCGAUCCAGCGAUGAAUCCAACCAAUCCUUCAUCAUGGAGACCAUGGUAAGGUUGGACA___GU ..((((((((((.......))))))))))...((((......))))........((((((....(((((((...)))))))..))))))........ (-20.17 = -19.78 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:43 2006