| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,657,594 – 24,657,698 |
| Length | 104 |
| Max. P | 0.529431 |
| Location | 24,657,594 – 24,657,698 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.12 |
| Mean single sequence MFE | -29.77 |
| Consensus MFE | -18.92 |
| Energy contribution | -20.57 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24657594 104 - 27905053 -GAAUAAACAAACUAGC-AUUGCGUCCGGGAACAGACGAAUAAUCAACC--GAGGAACACUCGUUUUCAACGCCAUGCACUCGAUGACGCGGACGCGCGCACAGUAGA------------ -..............((-((.((((..(..(((....((....))....--(((.....))))))..).)))).))))(((.(.((.((((....))))))))))...------------ ( -26.50) >DroSec_CAF1 16767 101 - 1 -GAAUAAACAAACUAGC-UGUGCGUCCGCGAACAGACGAA---UCACCC--GAGGAACACUCGUUUUCAACGCAAAGCACUCGAUGCCGCGGACGCGCGCCCAGUAGA------------ -..........(((.((-.(((((((((((..((..(((.---......--(((.....)))(((((......)))))..))).)).)))))))))))))..)))...------------ ( -33.60) >DroSim_CAF1 18892 101 - 1 -GAAUAAACAAACUAGC-UGUGCGUCCGCGAACAGACGAC---UCACCC--GAGGAACACUCGUUUUCAACGCAAUGCACUCGAUGACGCGGACGCGCGCCCAGUAGA------------ -..........(((.((-.(((((((((((..((..(((.---.....(--(((.....))))........((...))..))).)).)))))))))))))..)))...------------ ( -32.60) >DroEre_CAF1 16802 106 - 1 -GAAUAAACAAACUAGC-AGUGCGUCCGCGAACAGGCGAUUUAUCACCCCGGAGGAACACUCGUUUUCAACGCCAUGCACUCGAUGACGCGGACGCGCGCACAGUAGA------------ -..............((-.(((((((((((....((((.............(((.....)))(....)..)))).....(.....).)))))))))))))........------------ ( -33.60) >DroYak_CAF1 17070 106 - 1 -GAAUAAACAAACUAGC-AGUGCGUCCGCGAACAGGCGAUUUAACACCCCGGAGGACCACUCGUUUUCAACGUCAUGCACUCGAUGACGCGGACGCGCGCACAGUAGA------------ -..............((-.((((((((((((((.((.(......).))...(((.....))))))).....(((((.......)))))))))))))))))........------------ ( -34.40) >DroAna_CAF1 16308 106 - 1 CAAAUAAACAAACUCGACUCUCGAUCCGUG------CAAUUGUAGAAUCC-GGAGAAAACCC----UCAAC---AUGCAGCUUAUGACGAGGUCGCGCGUACAGUAGAAAUUGGCACCCG ..............((((.((((.((...(------(...((((......-.(((......)----))...---.))))))....))))))))))((.((.((((....))))..)).)) ( -17.90) >consensus _GAAUAAACAAACUAGC_AGUGCGUCCGCGAACAGACGAUU_AUCACCC__GAGGAACACUCGUUUUCAACGCCAUGCACUCGAUGACGCGGACGCGCGCACAGUAGA____________ ...........(((.((..(((((((((((.....................(((.....)))....(((.((.........)).))))))))))))))))..)))............... (-18.92 = -20.57 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:42 2006