Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,651,838 – 24,651,930 |
Length | 92 |
Max. P | 0.607862 |
Location | 24,651,838 – 24,651,930 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 81.81 |
Mean single sequence MFE | -30.98 |
Consensus MFE | -22.84 |
Energy contribution | -22.78 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.21 |
Mean z-score | -1.42 |
Structure conservation index | 0.74 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24651838 92 + 27905053 CUGCGGGCGGUGGUUGUCUUGCCGGCGGCAGCGGAGGAGCAGUUCUUUGGUUGCCAUUCUG----------AAUUGAGAGAUUCGAUUUUGGUUA--AGGAAAG ..((.(((((........))))).))((((((.((((((...)))))).)))))).((((.----------(((..(((.......)))..))).--))))... ( -31.60) >DroSec_CAF1 10979 92 + 1 CUGCGGGCGGUGGUUGUCUUGCCGGCGGCAGCGGAGGAGCAGUUCUUUGGUUGCCAUUCUG----------AAUUGAGAGAAUGGAUUUAGUUUA--AGGAAAG ..((.(((((........))))).))((((((.((((((...)))))).))))))...(((----------((((.(.....).)))))))....--....... ( -29.80) >DroSim_CAF1 11191 92 + 1 CUGCGGGCGGUGGUUGUCUUGCCGGUGGCAGCGGAGGAGCAGUUCUUUGGUUGCCAUUCUG----------AAUUGAGAGAUUGGAUUUAGUUUA--AGGAAAG ..((.(((((........))))).))((((((.((((((...)))))).)))))).(((((----------(((((((........)))))))).--))))... ( -27.00) >DroEre_CAF1 11104 92 + 1 CUGCGGGCGGUGGUUGUCUUGCCGGCGGCAGCGGAGGAGCAGUUCUUUGGUUGCCAUUCUG----------AAUUGAGAGAUUAGAUAUGUGGUA--AAACAUG ..((.(((((........))))).))((((((.((((((...)))))).))))))..((((----------(.((....)))))))(((((....--..))))) ( -31.10) >DroYak_CAF1 11368 92 + 1 CUGCAGGCGGUGGUUGUCUUGCCGGCGGCAGCGGAGGAGCAGUUCUUUGGUUGCCAUUCUG----------AAUUGAGAGAUUGCAUGUAGGGUU--AGAGAAG (((((.(((.((((......)))).)((((((.((((((...)))))).))))))......----------((((....)))))).)))))....--....... ( -30.90) >DroAna_CAF1 11323 104 + 1 CAGGAGGCGGUGGCUGCCUCGCCGGCGGUGGCGGUGGCGCAGUUCUUUGGUUGCCAUUCUGCGACUGCUGCAAUGAAACGAAUCAAUUAGUUGCAAUAGUAUAG ...(((((((...)))))))...((((((.((((((((((((....)))..)))))..)))).))))))(((((...............))))).......... ( -35.46) >consensus CUGCGGGCGGUGGUUGUCUUGCCGGCGGCAGCGGAGGAGCAGUUCUUUGGUUGCCAUUCUG__________AAUUGAGAGAUUGGAUUUAGGGUA__AGGAAAG ..((.(((((........))))).))((((((.((((((...)))))).))))))................................................. (-22.84 = -22.78 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:39 2006