| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,638,249 – 24,638,352 |
| Length | 103 |
| Max. P | 0.944245 |
| Location | 24,638,249 – 24,638,352 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 79.10 |
| Mean single sequence MFE | -34.64 |
| Consensus MFE | -26.47 |
| Energy contribution | -26.95 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.944245 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24638249 103 + 27905053 ---AGCCAAUGAUGUAAACGAUUGCAAUUUCCAGUGUGGGUGUGGCGUUGUUCCAUCCGCACAUGAUUCUUCUCCCUGGAGGAGCGAGUGAUUACCUGCAAGGGCC ---.(((..((..((((.((.((((........(((((((((..((...))..))))))))).......(((((....))))))))).)).))))...))..))). ( -35.10) >DroSec_CAF1 3037 103 + 1 ---AGCCAAUGAUGUAAACGAUUGCAAUUUCCAGUGUGGGUGUGGCGUUGUUCCAUCCGCACAUGAUUCUUCUCCCUGGAGGAGCGAGUGAUUACCUGCAAGGGCC ---.(((..((..((((.((.((((........(((((((((..((...))..))))))))).......(((((....))))))))).)).))))...))..))). ( -35.10) >DroEre_CAF1 5830 103 + 1 ---AGCCCAUGAUGUAAACGAUUGCAAUUUCCAGUGCGGAUGUGGCGUUGUUCCAUUCGCACAUGAUUCUUCUCCCCGGAGGAGUUAGUGAUUACCUGCAAGGGCC ---.((((....((((...(((..(........(((((((((..((...))..))))))))).((((((((((....)))))))))))..)))...)))).)))). ( -37.50) >DroWil_CAF1 2758 89 + 1 ---UGCAGUUGAUGAAAAAAAACGCAUCUUCCA-UGCGGAUGUGGCGUUGUUCCAUUCGUAUAUGAUGUUCC-------------AAAUGAUUUUCUGCAAGGGCC ---(((((..(((.(........(((((....(-((((((((..((...))..)))))))))..)))))...-------------...).)))..)))))...... ( -23.04) >DroYak_CAF1 5399 103 + 1 ---AGCCCAUGAUGUAAACGAUUGCAAUUUCCAGUGCGGAUGUGGCGUUGUUCCAUCCGCACAUGAUACUUCUCCUCGGAGGAGCGAGUGAUUACCUGCAAGGGCC ---.((((.((..((((.((.((((........(((((((((..((...))..))))))))).......(((((....))))))))).)).))))...)).)))). ( -40.80) >DroAna_CAF1 20568 99 + 1 AAUAUCCAGUGAUGUAGACUAUUGCAAU-----GUGCGUAUGUGGCGUUGUUCCAUACGCACAUGACUC--CCCCAUUGGGGGGCAAAUGAUUACCUGCAAGGGCC .....((..((..((((.(..((((.((-----(((((((((..((...))..)))))))))))....(--((((...)))))))))..).))))...))..)).. ( -36.30) >consensus ___AGCCAAUGAUGUAAACGAUUGCAAUUUCCAGUGCGGAUGUGGCGUUGUUCCAUCCGCACAUGAUUCUUCUCCCUGGAGGAGCGAGUGAUUACCUGCAAGGGCC ....(((..((..((((.((.((((........(((((((((..((...))..))))))))).......(((((....))))))))).)).))))...))..))). (-26.47 = -26.95 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:37 2006