Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,111,155 – 3,111,275 |
Length | 120 |
Max. P | 0.812309 |
Location | 3,111,155 – 3,111,275 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -27.50 |
Consensus MFE | -26.33 |
Energy contribution | -26.67 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.92 |
Structure conservation index | 0.96 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812309 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3111155 120 - 27905053 CUAAAAAAACAAUUUGCUAAAGUAUCUAUGAAUUCUAAGCGCCCAGAAAAUGGCUCAAUGGCGCCGCUAAAUGGAUGAAAAAUUCAUGGAAAACCGUUUUGCGGCCACCAGACAUAGAAU ........................((((((........(.(((........))).)..(((.(((((.((((((((((.....))))......)))))).)))))..)))..)))))).. ( -28.90) >DroSim_CAF1 4087 120 - 1 CUGAAAAAACAAUUUGCUAAAGUAUCUAUGAAUUCUAAGCGCCCAGAAAAUGGCUCAAUGGCGCCGCUAAAUGGAUGAAAAAUUCAUGGAAAACCGUUUUGCGGCCACCAGACAUAGAAU ........................((((((........(.(((........))).)..(((.(((((.((((((((((.....))))......)))))).)))))..)))..)))))).. ( -28.90) >DroYak_CAF1 1806 120 - 1 CUGAAAAAACAAUUUGCUAAAGUAUCUAUGAAUUCUAAGCGCCCAGAAAAUGGCUCAAUGGCGACGCUAAAUGGAUGAAAAAUUCAUGGAAAACCGUUUUGCGGCCACCAGACAUAGAAA ........................((((((........(.(((........))).)..((((..(((.((((((((((.....))))......)))))).))))))).....)))))).. ( -24.70) >consensus CUGAAAAAACAAUUUGCUAAAGUAUCUAUGAAUUCUAAGCGCCCAGAAAAUGGCUCAAUGGCGCCGCUAAAUGGAUGAAAAAUUCAUGGAAAACCGUUUUGCGGCCACCAGACAUAGAAU ........................((((((........(.(((........))).)..(((.(((((.((((((((((.....))))......)))))).)))))..)))..)))))).. (-26.33 = -26.67 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:31 2006