Locus 9237

Sequence ID 3R_DroMel_CAF1
Location 24,631,332 – 24,631,436
Length 104
Max. P 0.581371
window14766

overview

Window 6

Location 24,631,332 – 24,631,436
Length 104
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 84.64
Mean single sequence MFE -22.74
Consensus MFE -14.16
Energy contribution -14.28
Covariance contribution 0.12
Combinations/Pair 1.18
Mean z-score -2.00
Structure conservation index 0.62
SVM decision value 0.10
SVM RNA-class probability 0.581371
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24631332 104 - 27905053
UGCUCCCGAUUACAUAAUAUCCAUAUUCCACGUA-CCCGCAAAAGGGUAACACACAGUGCCA-----CGAUUGCUGACAAUGUCGCAACAACGGGAAUGACAGCAUAAUA
((((...(((........)))..((((((.((((-(((......)))).........(((.(-----(.((((....)))))).)))...)))))))))..))))..... ( -23.10)
>DroSec_CAF1 111322 104 - 1
UGCUCCCUAUUACAUAAUAUCCAUAUCCCACGUA-CCCGCAAAAGGGUACCACACAGUACCA-----CGAUUGCUGACAAUGUCGCGACAACGGGAAUGACAGCAUAAUA
((((...((((....))))..(((.((((..(((-(((......))))))............-----.(.((((.(((...))))))))...)))))))..))))..... ( -23.70)
>DroSim_CAF1 114071 104 - 1
UGCUCCUUAUUACAUAAUAUCCAUAUCCCACGUA-CCCGCAAAAGGGUACCACACAGUACCA-----CGAUUGCUGACAAUGUCGCGACAACGGGAAUGACAGCAUAAUA
((((...((((....))))..(((.((((..(((-(((......))))))............-----.(.((((.(((...))))))))...)))))))..))))..... ( -23.80)
>DroEre_CAF1 118370 98 - 1
---------UUACACAAUAACCAUAUCCCAUGUA-CCCGCAAAAGGGUACCG--CAGUACCACACAGCGCUUGCUGACAAUGUCGCGACAACAGGAAUGACAGCAUAAUA
---------............(((.(((...(((-(((......))))))((--(..((.....((((....))))....))..)))......))))))........... ( -21.40)
>DroYak_CAF1 113708 99 - 1
---------UUACACAAUAUCCCUAUUCCACAUAUCCCGCAAAAGGGUACCA--CAGUACCACACAGCGCUCGCUGACAAUGUCGCGACAACAGGAAUGACAGCAUAAUA
---------..............((((((........(((.....(((((..--..))))).....))).((((.(((...))))))).....))))))........... ( -21.70)
>consensus
UGCUCC__AUUACAUAAUAUCCAUAUCCCACGUA_CCCGCAAAAGGGUACCACACAGUACCA_____CGAUUGCUGACAAUGUCGCGACAACGGGAAUGACAGCAUAAUA
...................................((((......(((((......))))).......(.((((.(((...))))))))..))))............... (-14.16 = -14.28 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:32 2006