Locus 9234

Sequence ID 3R_DroMel_CAF1
Location 24,626,215 – 24,626,326
Length 111
Max. P 0.801380
window14762

overview

Window 2

Location 24,626,215 – 24,626,326
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 96.40
Mean single sequence MFE -25.96
Consensus MFE -23.96
Energy contribution -24.20
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.30
Structure conservation index 0.92
SVM decision value 0.62
SVM RNA-class probability 0.801380
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24626215 111 - 27905053
CUCUCCAGGACUUAUCCUGCCGACUCCUGGCCGUCCUUUGCACGUGUGCCCGGAGUUUAACUUUAAUUGAUUGCAUUAGUAUUCAAUUACGUUCUGCUCGCCAUCUCCCGC
.((..(((((....)))))..))....((((........(((....)))...((((..(((..(((((((.(((....))).))))))).)))..))))))))........ ( -27.50)
>DroSec_CAF1 106361 109 - 1
CUCUCCAGGACUUAUCCUGCCGACUCCUGGCCGUCCU--CCACGUGUGCCCGGAGUUUAACUUUAAUUGAUUGCAUUAGUAUUCAAUUACGUUCUGCUCGCCGUCUCCCGC
.....((((((..........((((((.((((((...--..)))...))).))))))......(((((((.(((....))).))))))).))))))............... ( -27.30)
>DroSim_CAF1 108510 111 - 1
CUCUCCAGGACUUAUCCUGCCGACUCCUGGCCGUCCUUUGCACGUGUGCCCGGAGUUUAACUUUAAUUGAUUGCAUUAGUAUUCAAUUACGUUCUGCUCGCCGUCUCCCGC
.....(((((....)))))..(((....(((........(((....)))...((((..(((..(((((((.(((....))).))))))).)))..))))))))))...... ( -27.10)
>DroEre_CAF1 113293 109 - 1
CUCUCCAGGACUUAU-CUGCCGACUUCUG-CCGUCCUUUGCACGUGUGCCCGGAGUUUAACUUUAAUUGAUUGCAUUAGUAUUCAAUUACGUUCUGUUCGCCGUCUCCCGC
..((((.((...(((-.(((.(((.....-..)))....))).)))..)).))))........(((((((.(((....))).)))))))...................... ( -20.30)
>DroYak_CAF1 108571 111 - 1
CUCUCCAGGACUUAUCCUGCCGACUCCUGGCCCUCCUUUGCACGUGUGCCCGGAGUUUAACUUUAAUUGAUUGCAUUAGUAUUCAAUUACGUUCUGCUCGCCGUCACCCGC
.....(((((....)))))..(((....(((........(((....)))...((((..(((..(((((((.(((....))).))))))).)))..))))))))))...... ( -27.60)
>consensus
CUCUCCAGGACUUAUCCUGCCGACUCCUGGCCGUCCUUUGCACGUGUGCCCGGAGUUUAACUUUAAUUGAUUGCAUUAGUAUUCAAUUACGUUCUGCUCGCCGUCUCCCGC
.....((((((..........((((((.((((((.......)))...))).))))))......(((((((.(((....))).))))))).))))))............... (-23.96 = -24.20 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:28 2006