Locus 9232

Sequence ID 3R_DroMel_CAF1
Location 24,613,199 – 24,613,299
Length 100
Max. P 0.510182
window14760

overview

Window 0

Location 24,613,199 – 24,613,299
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 88.13
Mean single sequence MFE -34.63
Consensus MFE -26.45
Energy contribution -27.48
Covariance contribution 1.03
Combinations/Pair 1.21
Mean z-score -2.44
Structure conservation index 0.76
SVM decision value -0.05
SVM RNA-class probability 0.510182
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24613199 100 - 27905053
UCAUCUGUCGCACUUGUUGCCCCACUGCUCGGGACCAAGAACAAGUUUUCUUUUGGCCCCCGAGCAUUGCUCAUUAUUGCGAAAUGUUCGGGGCUAAGCU
............((((..(((((..((((((((.((((((..........))))))..))))))))((((........)))).......))))))))).. ( -35.10)
>DroSec_CAF1 98515 100 - 1
UCUUCUGUCGCACUUGUUGCCCCGCUGCUCGGGACUCGGAACAAGUUUUCUUUUGGCCCCCGAGCAUUGCUCAUUAUUGCGAAAUGUUCGGGGCUAAGCU
.........(((((((((.(((((.....))))....).)))))))......((((((((.(((((((((........))))..))))))))))))))). ( -36.50)
>DroSim_CAF1 100354 100 - 1
UCUUCUGUCGCACUUGUUGCCCCGCUGCUCGGGACUCGGAACAAGUUUUCUUUUGGCCCCCGAGCAUUGCUCAUUAUUGCGAAAUGUUCGGGGCUAAGCU
.........(((((((((.(((((.....))))....).)))))))......((((((((.(((((((((........))))..))))))))))))))). ( -36.50)
>DroEre_CAF1 105311 100 - 1
UCUUCUGUCGCACUUGUUGCCCUGGUGCUCGGGACCAAGAACAAGUUUUCUUUUGGCCCCCGAGCAUUGCUCAUUAUUGCGAAAUGUUCGGGGCUAAGCU
............((((..(((((((((((((((.((((((..........))))))..))))))))((((........)))).....))))))))))).. ( -35.20)
>DroYak_CAF1 100608 100 - 1
UCCUCUGUCGCACUUGUUGCCCUGCUGCUCGGGACCAAGAAGAAGUUUUCUUUUGGCCCUCGAGCAUUGCUCAUUAUUGCGAAAUGUUCGGGGCUAAGCU
.........((.((((...(((........)))..)))).............(((((((.((((((((((........))))..))))))))))))))). ( -32.80)
>DroAna_CAF1 101580 91 - 1
GAAUGGGCUCCACUUGUUGCCCGUGUG--------GCGGACCAAGUUUUCGUUGGG-CCCCGAGCAUUGCUCAUUAUUGCGAAAUGUUCUGGGCUAAGCU
..((((((..(....)..)))))).((--------(....))).......(((.((-(((.(((((((((........))))..))))).))))).))). ( -31.70)
>consensus
UCUUCUGUCGCACUUGUUGCCCCGCUGCUCGGGACCAAGAACAAGUUUUCUUUUGGCCCCCGAGCAUUGCUCAUUAUUGCGAAAUGUUCGGGGCUAAGCU
............((((..((((((.((((((((.((((((..........))))))..))))))))((((........))))......)))))))))).. (-26.45 = -27.48 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:26 2006