Locus 9231

Sequence ID 3R_DroMel_CAF1
Location 24,612,614 – 24,612,707
Length 93
Max. P 0.998739
window14759

overview

Window 9

Location 24,612,614 – 24,612,707
Length 93
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 91.56
Mean single sequence MFE -30.07
Consensus MFE -27.14
Energy contribution -28.00
Covariance contribution 0.86
Combinations/Pair 1.12
Mean z-score -2.88
Structure conservation index 0.90
SVM decision value 3.21
SVM RNA-class probability 0.998739
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24612614 93 - 27905053
AAGCGGCAGCAUCAGUUGCUGCGGGCAGGACA---CCUCCCCCAAAAGGCUAUUGACCCAAUUUCUGGGCAAACAAUGGACCAGCAGAAAAGAAAU
..((((((((....))))))))(((.(((...---))).))).....((((((((.((((.....))))....)))))).)).............. ( -31.90)
>DroSec_CAF1 97928 96 - 1
AAGCGGCAGCAUCAGUUGCUGCGGGCAGGACACCACCUCCCCCAAAAGGCCAUUGACCCAAUUUCUGGGCAAACAAUGGACCAGCAGAAAAGAAAU
..((((((((....))))))))(((.(((......))).))).....((((((((.((((.....))))....)))))).)).............. ( -35.60)
>DroSim_CAF1 99775 96 - 1
AAGCGGCAGCAUCAGUUGCUGCGGGCAGGACACCACCUCCCCCAAAAGGCUAUUGACCCAAUUUCUGGGCAAACAAUGGACCAGCAGAAAAGAAAU
..((((((((....))))))))(((.(((......))).))).....((((((((.((((.....))))....)))))).)).............. ( -33.30)
>DroEre_CAF1 104738 93 - 1
AAGCGGGAGCAUCAGUUGCUGCGGGCAGGACA---CCUCCCCCAAAAGGCUAUUGACCCAAUUUCUGGGCAAACAAUGGACCAGCAGAAAAGAAAU
..((....)).((..((.(((((((.(((...---))).))).....((((((((.((((.....))))....)))))).)).))))))..))... ( -28.60)
>DroYak_CAF1 100010 93 - 1
AAGCGGGAGCAUCAGUUGCUGCGGGCAGGACA---CCUCCCCCAAAAGGCUAUUGACCCAAUUUCUGGGCAAACAAUGGACCAGCAGAAAAGAAAU
..((....)).((..((.(((((((.(((...---))).))).....((((((((.((((.....))))....)))))).)).))))))..))... ( -28.60)
>DroAna_CAF1 101080 90 - 1
CAGGACCAGCACCA---GCUGCGGGUUGGACG---CCACCCCCUAAAGGCCAUUGACCCAAUUUCAGGAAAAACAAUGGACCAGCAGAAAAGAAAU
..((.......)).---.(((((((.(((...---))).))).....((((((((..((.......)).....)))))).)).))))......... ( -22.40)
>consensus
AAGCGGCAGCAUCAGUUGCUGCGGGCAGGACA___CCUCCCCCAAAAGGCUAUUGACCCAAUUUCUGGGCAAACAAUGGACCAGCAGAAAAGAAAU
..((((((((....))))))))(((.(((......))).))).....((((((((.((((.....))))....)))))).)).............. (-27.14 = -28.00 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:25 2006