Locus 9230

Sequence ID 3R_DroMel_CAF1
Location 24,611,843 – 24,611,945
Length 102
Max. P 0.578413
window14758

overview

Window 8

Location 24,611,843 – 24,611,945
Length 102
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 80.73
Mean single sequence MFE -43.28
Consensus MFE -27.93
Energy contribution -28.22
Covariance contribution 0.28
Combinations/Pair 1.27
Mean z-score -1.50
Structure conservation index 0.65
SVM decision value 0.09
SVM RNA-class probability 0.578413
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24611843 102 - 27905053
CUAAACUAGAAGCCCGGCAGCGGAUCAGGCCAGUUCAUGGCCCUCGUUCUGCGGCA-------GCCGUCGAAGGACGAAGGACGCAGUCGGCCAGAGGCUGAGCGUAAU
...........((((((.(((((....(((((.....))))).)))))))).))).-------..((((....))))....((((..((((((...))))))))))... ( -39.90)
>DroSec_CAF1 97133 102 - 1
CCAAAGUAGAAGCCCGGGAGCGGAUUAGGCCAGUUCAUGGCCCUCGUCCUGCGGCA-------GCCGUCGAAGGACGAAGGACGCAGUCGGCCUGAUGCUGAACGUAAU
....((((..((.((((..(((..((.(((((.....))))).(((((((.((((.-------...)))).)))))))))..)))..)))).))..))))......... ( -41.60)
>DroSim_CAF1 98997 102 - 1
CCAAACUAGAAGCCCGGGAGCGGAUCAGGCCAGUUCAUGGCCCUCGUCCUGCGGCA-------GCCGUCGAAGGACGAAGGACGCAGUCGGCCUGAUGCUGAACGUAAU
....((....((((((....)))((((((((..((.....((.(((((((.((((.-------...)))).))))))).))....))..)))))))))))....))... ( -41.50)
>DroEre_CAF1 103758 102 - 1
CCGAACUAGAAGCCCGGGAGCGGAUCAGGCCAGUUCAUGGCCCUCGUCCUGCGGCAGGCUGCAGCCGUCGAA-------GGACGCGGUGGGCCUGUGGCUGAGCGUAAU
(((..(.....)..)))..((((((..(((((.....)))))...)))).((.(((((((.((.(((((...-------.)))).).))))))))).))...))..... ( -44.90)
>DroYak_CAF1 98990 109 - 1
CCGAACUAGAAGCCCGGGAGCGGAUCAGGCCAGUUCAUGGCCCUCGUCCUGCGGCAAGCUGCAGUCGUCGAAGGACGAAGGACGCGGUGGGCCUGUGGCUGAGCGUAAU
...........(((((....))).((((.(((...((.(((((.((((((((((....))))..(((((....)))))))))))....))))))))))))))))..... ( -47.80)
>DroAna_CAF1 100403 102 - 1
-----ACAGAGUCCCCAGGGCUGAUCAGGCCAGUUCAUGGCCC-AGUCCUGCGGCAAGGUUCUGUGGCAGAAAGUCGAGGGGCA-AGUCAGCCUGUGGCUGAGCGUAAU
-----.....(((((((((((((....(((((.....))))))-)))))))((((....(((((...))))).)))).))))).-..((((((...))))))....... ( -44.00)
>consensus
CCAAACUAGAAGCCCGGGAGCGGAUCAGGCCAGUUCAUGGCCCUCGUCCUGCGGCA_______GCCGUCGAAGGACGAAGGACGCAGUCGGCCUGAGGCUGAGCGUAAU
.............(((....)))....(((((.....)))))(((((((((((((........)))))..........)))))).))(((((.....)))))....... (-27.93 = -28.22 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:24 2006