Locus 9229

Sequence ID 3R_DroMel_CAF1
Location 24,611,689 – 24,611,779
Length 90
Max. P 0.854483
window14757

overview

Window 7

Location 24,611,689 – 24,611,779
Length 90
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 80.46
Mean single sequence MFE -28.81
Consensus MFE -16.88
Energy contribution -16.43
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -2.38
Structure conservation index 0.59
SVM decision value 0.80
SVM RNA-class probability 0.854483
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24611689 90 + 27905053
----GCC--GCGCAACCAGAGACGCCAGCGAUUACUCUCCGUUCGCCAUUCAAUUGGCGCUGCACAAAAUUAAUUGCAGGCAACGGCAGCAGCGGC
----(((--((((..((...(..(((.(((((((......((.(((((......)))))..)).......))))))).)))..)))..)).))))) ( -31.22)
>DroPse_CAF1 109382 94 + 1
ACUUUCCACUCCCUACUCCAGACCUCCUUCGCCAUUCUCCAUUCGCCAUUCAAUUGGCGCUGCACAAAAUUAAUUGCAGGCAAUGGCGG--GUCGU
....................((((.....(((((((.......(((((......)))))(((((..........)))))..))))))))--))).. ( -26.60)
>DroSim_CAF1 98843 90 + 1
----UCC--GCGCAACCAGAGACGCCAGCGAUUACUCUCCGUUCGCCAUUCAAUUGGCGCUGCACAAAAUUAAUUGCAGGCAACGGCAGCGGCGGC
----.((--((((..((...(..(((.(((((((......((.(((((......)))))..)).......))))))).)))..)))..)).)))). ( -28.32)
>DroEre_CAF1 103604 90 + 1
----UCC--GCGCAACUGGAGACCCCACCGAUUACUCUCCGUUCGCCAUUCAAUUGGCGCUGCACAAAAUUAAUUGCAGGCAACGGCAACGGCGGG
----.((--((((....(((((.............)))))...(((((......)))))(((((..........)))))))..((....)))))). ( -30.82)
>DroYak_CAF1 98836 90 + 1
----UCC--GCGCAAGCAGAGACGCCACCGAUUACUCUCCGUUCGCCAUUCAAUUGGCGCUGCACAAAAUUAAUUGCAGGCAACGGCAACGGCGGG
----.((--((....)).....((((...((....)).((((((((((......)))))(((((..........)))))..)))))....)))))) ( -29.30)
>DroPer_CAF1 88917 94 + 1
ACUUUCCACUCCCUACUCCAGACCUCCUUCGCCAUUCUCCAUUCGCCAUUCAAUUGGCGCUGCACAAAAUUAAUUGCAGGCAAUGGCGG--GUCGU
....................((((.....(((((((.......(((((......)))))(((((..........)))))..))))))))--))).. ( -26.60)
>consensus
____UCC__GCGCAACCAGAGACCCCACCGAUUACUCUCCGUUCGCCAUUCAAUUGGCGCUGCACAAAAUUAAUUGCAGGCAACGGCAGCGGCGGC
......................................((((((((((......)))))(((((..........)))))..))))).......... (-16.88 = -16.43 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:23 2006