Locus 9228

Sequence ID 3R_DroMel_CAF1
Location 24,607,787 – 24,607,882
Length 95
Max. P 0.536331
window14756

overview

Window 6

Location 24,607,787 – 24,607,882
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 81.86
Mean single sequence MFE -24.14
Consensus MFE -17.94
Energy contribution -19.80
Covariance contribution 1.86
Combinations/Pair 1.05
Mean z-score -1.28
Structure conservation index 0.74
SVM decision value 0.01
SVM RNA-class probability 0.536331
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24607787 95 + 27905053
GUUACUAAAAAUAAUGAGCCCGCUGACUGAGUGUUUGGUCAGCGGUACCGAAAGAGCCAUAUCUGAAUGGAGUAGCAGCACUGGAAAAAAUACCU
((((((.............((((((((..(....)..))))))))..(((..(((......)))...)))))))))................... ( -26.80)
>DroSec_CAF1 93172 95 + 1
GUUACUAAAAAUAAUGAGCCCGCUGACUGAGUGUUUGGUCAGCGGUACCGAAAGAGCCAUUUCUGAAUGGAGCCGCUGCACUGGAAGAAAUACAU
...............(.((((((((((..(....)..))))))))...(....).)))((((((...(((.((....)).)))..)))))).... ( -24.90)
>DroSim_CAF1 94951 95 + 1
GUUACUAAAAAUAAUGAGCCCGCUGACUGAGUGUUUGGUCAGCGGUACCGAAAGAGCCAUUUCUGAAUGGAGUAGCUGCACUGAGAGAAAUGCCU
((((((......((((.((((((((((..(....)..))))))))...(....).)))))).........)))))).(((.(......).))).. ( -27.36)
>DroEre_CAF1 99754 94 + 1
GUUACGAAAAAUAAUGAGUCCGCUGACUGAGUGUUUGGUUAGCGGCACCGAAUGAGCCAUUUGUGAAUGGAGUAGCUACACUGGGAGAAAAGCG-
(((((.........((.((((((((((..(....)..)))))))).))))......(((((....))))).)))))..................- ( -24.40)
>DroYak_CAF1 94870 94 + 1
GUUACUAAAAAUAAUGAGUCCGCUGACUGAGUGUUUGGUCAGCGGCACCGAAAGAGCCAGUUCUGAAUGGAGUAGCUGCACUGGGAGAAAAGCA-
((((((...........(.((((((((..(....)..))))))))).(((..((((....))))...)))))))))..................- ( -27.70)
>DroAna_CAF1 96609 72 + 1
GUUACUAAAAAUAAUGAGCCCUCUGACUGAGUGUUUGGUCAGCAGGAG-GUAAGGGACAU-----AAUGGAAUA----CACA-------------
.................(((..(((.((((.(....).)))))))..)-)).........-----.........----....------------- ( -13.70)
>consensus
GUUACUAAAAAUAAUGAGCCCGCUGACUGAGUGUUUGGUCAGCGGUACCGAAAGAGCCAUUUCUGAAUGGAGUAGCUGCACUGGGAGAAAUGCA_
((((((.............((((((((..(....)..))))))))...........(((((....)))))))))))................... (-17.94 = -19.80 +   1.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:23 2006