Locus 9227

Sequence ID 3R_DroMel_CAF1
Location 24,605,589 – 24,605,679
Length 90
Max. P 0.620813
window14755

overview

Window 5

Location 24,605,589 – 24,605,679
Length 90
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 77.15
Mean single sequence MFE -31.15
Consensus MFE -13.04
Energy contribution -12.85
Covariance contribution -0.19
Combinations/Pair 1.16
Mean z-score -2.18
Structure conservation index 0.42
SVM decision value 0.18
SVM RNA-class probability 0.620813
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24605589 90 - 27905053
GGUUCGCUUUUUGGCCUGCAGAUGGCGUCGACUUAAGGUGGCAACUACUUAAAGUUCAACUUUGGCUUAAGCACUUGCUGCAG--------GCUGCAG---
.....((.....(((((((((..((.((.(((((.(((((....).)))).)))))..))....((....)).))..))))))--------)))))..--- ( -26.70)
>DroPse_CAF1 103400 96 - 1
--UCCG--UUUUGUGCAGCAGCUGCAGCGGACUUAAGGUGGCAUCUACUUAAAGUUCAACUUUGGCUUAAGCUGCCACUGCCACUGCCACUGCUGCAGUU-
--....--.....((((((((..((((.((......(((((((.((..((((((.....))))))....)).))))))).)).))))..))))))))...- ( -38.20)
>DroSim_CAF1 92749 90 - 1
GGUUCGCUUUUUGGCCUGCAGAUGGCGUCGACUUAAGGUGGCAACUACUUAAAGUUCAACUUUGGCUUAAGCACUCGCUGCAG--------GCUGCAG---
.....((.....(((((((((.(((.((.(.(((((((((....).))((((((.....))))))))))))))))))))))))--------)))))..--- ( -28.50)
>DroWil_CAF1 99749 95 - 1
GUUUUGCUACUUG--CCGCAGCUG-CAACGUCUUAAGGUGCCAUCUACUUAAAGUUCAACUUUGGCUUAAGCUUUUCUUGCUGGUGC---UGCUGCAGGUA
.......((((((--(.(((((.(-(((.(....(((((((((...................))))....))))).)))))....))---))).))))))) ( -26.81)
>DroYak_CAF1 92673 89 - 1
GGUUCGCUUUUUGGCCUGCAGAUGGCGUCGACUUAAGGUGGCAACUACUUAAAGUUCAACUUUGGCUUAAGCACUCGCUGCAG--------GCUGCA----
.....((.....(((((((((.(((.((.(.(((((((((....).))((((((.....))))))))))))))))))))))))--------))))).---- ( -28.50)
>DroPer_CAF1 82931 96 - 1
--UCCG--UUUUGUGCAGCAGCUGCAGCGGACUUAAGGUGGCAUCUACUUAAAGUUCAACUUUGGCUUAAGCUGCCACUGCCACUGCCACUGCUGCAGUU-
--....--.....((((((((..((((.((......(((((((.((..((((((.....))))))....)).))))))).)).))))..))))))))...- ( -38.20)
>consensus
GGUUCGCUUUUUGGCCUGCAGAUGGCGUCGACUUAAGGUGGCAACUACUUAAAGUUCAACUUUGGCUUAAGCACUCGCUGCAG________GCUGCAG___
.................((((..((....(((((.((((((...)))))).)))))........((....)).))..)))).................... (-13.04 = -12.85 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:22 2006