| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,601,700 – 24,601,797 |
| Length | 97 |
| Max. P | 0.669624 |
| Location | 24,601,700 – 24,601,797 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.81 |
| Mean single sequence MFE | -24.97 |
| Consensus MFE | -18.82 |
| Energy contribution | -19.22 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24601700 97 + 27905053 C---ACACAACUGGGCGUGUCCAAUCAAAAUAUGCAAAUGUUUUAUCCGUAAAACGUCGCUUUGAUGGAAUUUCGGCACAUUUCGCC--------GCUCAGUUGC------UCC------ .---...(((((((((...((((.(((((....((..((((((((....)))))))).))))))))))).....(((.......)))--------))))))))).------...------ ( -31.10) >DroVir_CAF1 100262 93 + 1 CUACACCGAGCUGGGCGUGUCCAAUCAAAAUAUGCAAAUGUUUUAUCCGUAAAACGUCGCUUUGAUGGAAUUUCAGCACAUUUUGUU---------CCC-GCU----------------- .........((((((....((((.(((((....((..((((((((....)))))))).)))))))))))..))))))..........---------...-...----------------- ( -19.80) >DroPse_CAF1 99264 111 + 1 C---ACACAACUGGGCGUGUCCAAUCAAAAUAUGCAAAUGUUUUAUCCGUAAAACGUCGCUUUGAUGGAAUUUCGGCACAUUUCGCCAGCUUUCCUCCCAGUUGC------UGCCGACUG .---.((((((((((.(..((((.(((((....((..((((((((....)))))))).))))))))))).....(((.......))).......).)))))))).------))....... ( -30.10) >DroWil_CAF1 94162 89 + 1 C---ACAAAACUGGGCGUGUCCAAUCAAAAUAUGCAAAUGUUUUAUCCGUAAAACGUCGCUUUGAUGGAAUUUCGGCACAUUUCG----------------UUGC------UCC------ .---........(((((..((((.(((((....((..((((((((....)))))))).)))))))))))....(((......)))----------------.)))------)).------ ( -16.40) >DroAna_CAF1 90726 102 + 1 C---ACACAACUGGGCGUGUCCAAUCAAAAUAUGCAAAUGUUUUAUCCGUAAAACGUCGCUUUGAUGGAAUUUCGGCACAUUUCGCU---------UUCAGUUCCUCGUCCUCC------ .---........(((((......((((((....((..((((((((....)))))))).))))))))((((((..(((.......)))---------...)))))).)))))...------ ( -22.30) >DroPer_CAF1 78842 111 + 1 C---ACACAACUGGGCGUGUCCAAUCAAAAUAUGCAAAUGUUUUAUCCGUAAAACGUCGCUUUGAUGGAAUUUCGGCACAUUUCGCCAGCUUUCCUCCCAGUUGC------UGCCGACUG .---.((((((((((.(..((((.(((((....((..((((((((....)))))))).))))))))))).....(((.......))).......).)))))))).------))....... ( -30.10) >consensus C___ACACAACUGGGCGUGUCCAAUCAAAAUAUGCAAAUGUUUUAUCCGUAAAACGUCGCUUUGAUGGAAUUUCGGCACAUUUCGCC_________CCCAGUUGC______UCC______ ........(((((((....((((.(((((....((..((((((((....)))))))).))))))))))).....(((.......))).........)))))))................. (-18.82 = -19.22 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:21 2006