Locus 9225

Sequence ID 3R_DroMel_CAF1
Location 24,597,183 – 24,597,278
Length 95
Max. P 0.985987
window14753

overview

Window 3

Location 24,597,183 – 24,597,278
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 92.21
Mean single sequence MFE -18.18
Consensus MFE -16.82
Energy contribution -17.14
Covariance contribution 0.32
Combinations/Pair 1.10
Mean z-score -1.67
Structure conservation index 0.93
SVM decision value 2.03
SVM RNA-class probability 0.985987
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24597183 95 + 27905053
AAGCCAAUCGACAGGCUCAUCUCUCACUUCUCUCUCACAUUCUCUGUGUAAUUCCUGCAUGUCCUUUAUUUGCCGUGUCUGUCAUUGUUUUGCCA
....((((.(((((((.(.................((((.....))))........(((...........))).).)))))))))))........ ( -16.40)
>DroSec_CAF1 82773 95 + 1
AAGCCAAUCGGCAGGCUCAUCUCUCACUUCUCUCUCACAUUCUCUGUGUAAUUCCUGCAUGUCCUUUAUUUGCCGUGUCUGUCAUUGUUUUGGCA
..(((((..(((((((.(.................((((.....))))........(((...........))).).)))))))......))))). ( -19.80)
>DroSim_CAF1 84449 95 + 1
AAGCCAAUCGGCAGGCUCAUCUCUCACUUCUCUCUCACAUUCUCUGUGUAAUUCCUGCAUGUCCUUUAUUUGCCGUGUCUGUCAUUGUUUUGGCA
..(((((..(((((((.(.................((((.....))))........(((...........))).).)))))))......))))). ( -19.80)
>DroEre_CAF1 87266 95 + 1
AAGCCAAUCGGCAGGCUCAUCUGUUACUUCUCUCUCACAUUCUCUGUGUAAUUCCUGCAUGUCCUUUAUUUGCCGUGCCUGUCAUUGUUUUCGCA
..((((((.(((((((.(.................((((.....))))........(((...........))).).))))))))))).....)). ( -18.90)
>DroYak_CAF1 83933 84 + 1
AAGCCAAUCGGCAGUCUCU-----------UCUCUCACAUUCUCUGUGUAAUUCCUGCAUGUCCUUUAUUUGCCGUGUCUGUCAUUGUUUUGGCA
..(((((..(((((.(.(.-----------.....((((.....))))........(((...........))).).).)))))......))))). ( -16.00)
>consensus
AAGCCAAUCGGCAGGCUCAUCUCUCACUUCUCUCUCACAUUCUCUGUGUAAUUCCUGCAUGUCCUUUAUUUGCCGUGUCUGUCAUUGUUUUGGCA
..(((((..(((((((.(.................((((.....))))........(((...........))).).)))))))......))))). (-16.82 = -17.14 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:20 2006