Locus 9224

Sequence ID 3R_DroMel_CAF1
Location 24,580,915 – 24,581,012
Length 97
Max. P 0.563565
window14752

overview

Window 2

Location 24,580,915 – 24,581,012
Length 97
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 91.20
Mean single sequence MFE -16.52
Consensus MFE -13.07
Energy contribution -13.07
Covariance contribution 0.00
Combinations/Pair 1.11
Mean z-score -1.43
Structure conservation index 0.79
SVM decision value 0.06
SVM RNA-class probability 0.563565
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24580915 97 + 27905053
CAGUUCAAUUUAAAAGAAACAAAUUGGACAAUAAAUAAGGCGAUUACGAUAUUAUCAUGCUGAAAAUAA-ACUCACCGCAUGGUUCUAUAAAUUUUUC
..(((((((((.........)))))))))...................(((..((((((((((......-..)))..)))))))..)))......... ( -15.80)
>DroSec_CAF1 79369 97 + 1
CAGUUCAAUUUAAAAGAAACAAAUUGGACAAUAAAUAAGGCGAUUUCGAUAUUAUCAUGCUGGAAAUAA-ACUCACCGCAUGGUUCUUUCAAUUUUUC
..(((((((((.........)))))))))..................((....(((((((.((......-.....)))))))))....))........ ( -16.80)
>DroSim_CAF1 80928 97 + 1
CAGUUCAAUUUAAAAGAAACAAAUUGGACAAUAAAUAAGGCGAUUACGAUAUUAUCAUGCUGGAAAUAA-ACUCACAGCAUGGUUCUUUCAAUUUUUC
..(((((((((.........)))))))))..................((....(((((((((((.....-..)).)))))))))....))........ ( -21.10)
>DroEre_CAF1 83921 98 + 1
CGGUUCAAUUUAAAAGAAACAAAUUGAACAAUAAAUAAGGCGAUUACGAUAUUAUCUUGCCAAAAAUAGCAUUCACCGCAUGGUUCUUUCAAUUUUAC
..(((((((((.........))))))))).........(((((.............))))).(((((.......(((....))).......))))).. ( -12.86)
>DroYak_CAF1 80813 98 + 1
CUGUUCAGUUUAAAAGAAACAAAUUGAACAAUAAAUAAGGCGAUUACGAUAUUAUCAUGCAGAAAAUAAAAAUCACCGCAUGGUUUUUUCAAUUUCAC
.((((((((((.........))))))))))...........((....((.(..(((((((.................)))))))..).))....)).. ( -16.03)
>consensus
CAGUUCAAUUUAAAAGAAACAAAUUGGACAAUAAAUAAGGCGAUUACGAUAUUAUCAUGCUGAAAAUAA_ACUCACCGCAUGGUUCUUUCAAUUUUUC
..(((((((((.........)))))))))..................((....(((((((.................)))))))....))........ (-13.07 = -13.07 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:19 2006