Locus 9223

Sequence ID 3R_DroMel_CAF1
Location 24,575,990 – 24,576,086
Length 96
Max. P 0.500000
window14751

overview

Window 1

Location 24,575,990 – 24,576,086
Length 96
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 78.47
Mean single sequence MFE -28.73
Consensus MFE -21.12
Energy contribution -20.60
Covariance contribution -0.53
Combinations/Pair 1.29
Mean z-score -0.91
Structure conservation index 0.74
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24575990 96 - 27905053
------UUGUC--CACAU-UCAUCCCUUUGUAGAUCUGGGGCGGUGAGUCCAUCGAGCUGGCCAUUAAAUUGUGGCUUUGCGGUGGACAAAUUGAGAUCGUGCCC
------.....--(((..-((((((((..(.....)..))).)))))((((((((....((((((......))))))...))))))))...........)))... ( -34.20)
>DroVir_CAF1 83501 97 - 1
------AUUUGGGGUUUU-CCCUUGU-CUGUAGAUUUGGGGCGGCGAGUCCAUUGAGCUUGCCAUUAAAUUGUGGCUUUGCGGCGGACAAAUUGAGAUCGUGCCC
------.....(((((((-(..((((-((((.......((((.....)))).....((..(((((......)))))...)).))))))))...))))....)))) ( -31.00)
>DroGri_CAF1 86666 88 - 1
------UUUUU----------CGCGU-CUGUAGAUUUGGGGCGGUGAGUCCAUUGAGCUAGCUAUUAAAUUGUGGCUUUGCGGUGGACAAAUUGAGAUCGUGCCC
------.....----------((.((-(....))).))(((((....((((((((....((((((......))))))...)))))))).....(....).))))) ( -25.50)
>DroWil_CAF1 80423 102 - 1
UAUCAUGAGUC--CAUUUCCUCUUUC-UUGCAGAUUUGGGGUGGCGAGUCCAUUGAGCUUGCCAUUAAAUUGUGGCUUUGUGGCGGACAAAUUGAGAUCGUGCCC
...(((((.((--.((((((.((...-..((.((((((..(((((((((.......)))))))))))))))...)).....)).)))..))).))..)))))... ( -26.40)
>DroMoj_CAF1 93409 85 - 1
------UUUUG-------------CU-CUGUAGAUUUGGGGUGGCGAGUCCAUUGAGUUGGCCAUUAAGUUGUGGCUUUGCGGCGGACAAAUUGAGAUCGUGCCC
------....(-------------((-(((......))))))((((.((((.(((....((((((......))))))...))).)))).....(....).)))). ( -23.70)
>DroPer_CAF1 64207 95 - 1
------CUGGC--UUUUU-GUCUCUC-UUGCAGAUCUGGGGCGGCGAAUCCAUCGAGCUGGCCAUUAAAUUGUGGCUUUGCGGUGGACAAAUUGAGAUCGUGCCC
------..(((--..(((-(((.(((-(.........)))).))))))(((((((....((((((......))))))...)))))))..............))). ( -31.60)
>consensus
______UUGUC____UUU___CUCCC_CUGUAGAUUUGGGGCGGCGAGUCCAUUGAGCUGGCCAUUAAAUUGUGGCUUUGCGGCGGACAAAUUGAGAUCGUGCCC
......................................(((((.(((((((.(((....((((((......))))))...))).)))).........)))))))) (-21.12 = -20.60 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:18 2006