Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,575,303 – 24,575,470 |
Length | 167 |
Max. P | 0.912671 |
Location | 24,575,303 – 24,575,408 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 87.81 |
Mean single sequence MFE | -26.20 |
Consensus MFE | -20.67 |
Energy contribution | -20.51 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.22 |
Mean z-score | -1.56 |
Structure conservation index | 0.79 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.637943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24575303 105 + 27905053 GUAGCCGACAGCUCAUCGAAGUGCAUCCUGCGAAUUGAUUGAGGGCAAGUUAUUUUUCAAUGAACAAUAACUCAGAUAGCUGACCACACAGCUCAUAAAAGUAUA ...(((.....((((((((..(((.....)))..)))).))))))).(((((((.(((...))).))))))).....(((((......)))))............ ( -22.60) >DroSec_CAF1 73794 105 + 1 GUGGCCGACAGCUCAUCGAAGUGCUUCCUGCGAAUUGAUUGAGGGUUAGUUAUUUUUCAAUGAGCAAUAACUCAGAAAGCUGACCACACAGCUCAUAAAGAUAUA (((........((((((((..(((.....)))..)))).))))(((((((....((((..((((......))))))))))))))).)))................ ( -26.10) >DroSim_CAF1 75354 105 + 1 GUGGCCGACAGCUCAUCGAAGUGCAUCCUGCGAAUUGAUUGAGGGUUAGUUAUUUUUCAAUGAACAAUAGCUCAAAUAGCUGACCACACAGCUCAUAAAAGCACA (((........((((((((..(((.....)))..)))).))))(((((((((((......(((........)))))))))))))).))).(((......)))... ( -27.40) >DroEre_CAF1 78326 105 + 1 GUGGCCGACAGCUCGUCAAAGUGCAUCCUGCGAGUUGAUUGAGUGUUAGUUAUUUUUCAAUUAACCAUAACUCAGAUAACUGGCCACACAGCUCAGAAAAUCACA (((((((.((((((((...((......)))))))))).(((((((((((((.......)))))))....)))))).....))))))).................. ( -30.50) >DroYak_CAF1 75120 105 + 1 GUGGCCGACAGCUCGUCAAAGUGCAUCCUGCGAGUUGAUUGAGGGUUAGUUAUUUUUCAUAUAACCAUAACACAGAUAACUGAGCACACUGCUCAUAAAAAUUUA (((........((((((((..(((.....)))..)))).))))(((((.............)))))....))).......(((((.....))))).......... ( -24.42) >consensus GUGGCCGACAGCUCAUCGAAGUGCAUCCUGCGAAUUGAUUGAGGGUUAGUUAUUUUUCAAUGAACAAUAACUCAGAUAGCUGACCACACAGCUCAUAAAAAUAUA ..(((.(....((((((((..(((.....)))..)))).))))((((((((((((..................))))))))))))...).)))............ (-20.67 = -20.51 + -0.16)
Location | 24,575,374 – 24,575,470 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 72.77 |
Mean single sequence MFE | -14.12 |
Consensus MFE | -1.84 |
Energy contribution | -2.44 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.92 |
Structure conservation index | 0.13 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912671 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24575374 96 + 27905053 UCAGAUAGCUGACCACACAGCUCAUAAAAGUAUAACUUUUAGAGCUACAUAAAAAUGUGUAAGAUAUAUUAAACCAAAAGAUGCCAUCAUUACUGA ...(((.((..........((((.((((((.....))))))))))((((((....)))))).....................)).)))........ ( -17.40) >DroSec_CAF1 73865 91 + 1 UCAGAAAGCUGACCACACAGCUCAUAAAGAUAUA--UUGUAGAGCUACAUGAAAAUGUGUUAGAUAUAUAAU---AAGAAAUGCCAUCAUUACUGA ((((..(((((......))))).......(((((--((....(((.((((....))))))).)))))))...---.................)))) ( -17.80) >DroSim_CAF1 75425 96 + 1 UCAAAUAGCUGACCACACAGCUCAUAAAAGCACAACUUUUAGAGGAACAUGAAAACGUGUUAGAUAUAUAAAACCAAAAGAGGCCAUCAUUACUGA ......(((((......)))))..((((((.....))))))((((((((((....))))))............((......)))).))........ ( -14.40) >DroEre_CAF1 78397 85 + 1 UCAGAUAACUGGCCACACAGCUCAGAAAAUCACAACUAUUAG---------CACAAAUGUUAUAAAUAUAAUAAUGAAAACUGCAAUCAUAACU-- ...(((..(((((......)).)))................(---------((.....(((((.......)))))......))).)))......-- ( -7.80) >DroYak_CAF1 75191 87 + 1 ACAGAUAACUGAGCACACUGCUCAUAAAAAUUUAACUAUUAG---------CACAUAUGUUAUAAAUAUAAUAUUAAAAGCUGCAAUCAUAACUAA ...(((...(((((.....)))))...............(((---------(....(((((((....))))))).....))))..)))........ ( -13.20) >consensus UCAGAUAGCUGACCACACAGCUCAUAAAAAUAUAACUUUUAGAG__ACAU_AAAAUGUGUUAGAUAUAUAAUACCAAAAGAUGCCAUCAUUACUGA ......(((((......))))).......................................................................... ( -1.84 = -2.44 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:17 2006