Locus 9221

Sequence ID 3R_DroMel_CAF1
Location 24,573,154 – 24,573,257
Length 103
Max. P 0.899835
window14748

overview

Window 8

Location 24,573,154 – 24,573,257
Length 103
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 76.06
Mean single sequence MFE -15.90
Consensus MFE -13.49
Energy contribution -12.80
Covariance contribution -0.69
Combinations/Pair 1.20
Mean z-score -1.20
Structure conservation index 0.85
SVM decision value 1.01
SVM RNA-class probability 0.899835
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24573154 103 - 27905053
A-GGAUAGAAAAUUCGCGGAAAGUACGAAAAAAAUGAAAACGAAAUGAGCGAGGGCUAA-AAACUUAUAAGCCGCGAGCGUGGAGCGUAGAAGUUGCGGAAUAAC
.-..........(((((((....((((....................(((....)))..-...........((((....))))..))))....)))))))..... ( -18.10)
>DroPse_CAF1 81844 80 - 1
A-G-----AAUAUUCGUGAAA----------------AAAUGAAAUGAGCGAAGGCUAAAAAACUUAUAAGCCGCAAGCGUAAAGCG---AAGUUACGGACCGAC
.-.-----....(((((((..----------------...((......((...((((............))))....))......))---...)))))))..... ( -12.80)
>DroSec_CAF1 71648 102 - 1
A-GGAUAGAAAAUUCGCGGAAAGUACGAAA-AAAUGAAAACGAAAUGAGCGAGGGCUAA-AAACUUAUAAGCCGCAAGCGUGGAGCGUAGAAGUUGCGGAAUAAC
.-..........(((((((....((((...-................(((....)))..-...........((((....))))..))))....)))))))..... ( -17.60)
>DroEre_CAF1 76159 104 - 1
AGGGAUAGAAAAUUCGCGGAAAGUACGAAAAAAAUUAAAACGAAAUGAGCGAGGGCUAA-AAACUUAUAAGCCGCGAGCGUGGAGCGUAGAAGUUGCGGAAUAAC
............(((((((....((((....................(((....)))..-...........((((....))))..))))....)))))))..... ( -18.10)
>DroAna_CAF1 73556 82 - 1
A-GG-----AAAUUCGUGGAAA--------AAAAUU------AAAUGAGCGAAGGCUAAAAAACUUAUAAGCCGCAAGCGUAAAGCG---AAGUUGCGGAAUAUC
.-.(-----(.((((((((...--------......------.....(((....)))..............))))...(((((....---...))))))))).)) ( -15.99)
>DroPer_CAF1 61277 80 - 1
A-G-----AAUAUUCGUGAAA----------------AAAUGAAAUGAGCGAAGGCUAAAAAACUUAUAAGCCGCAAGCGUAAAGCG---AAGUUACGGACCGAC
.-.-----....(((((((..----------------...((......((...((((............))))....))......))---...)))))))..... ( -12.80)
>consensus
A_GG____AAAAUUCGCGGAAA_________AAAU__AAACGAAAUGAGCGAAGGCUAA_AAACUUAUAAGCCGCAAGCGUAAAGCG___AAGUUGCGGAAUAAC
............(((((((.............................((...((((............))))))..((.....)).......)))))))..... (-13.49 = -12.80 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:16 2006