Locus 9220

Sequence ID 3R_DroMel_CAF1
Location 24,572,297 – 24,572,394
Length 97
Max. P 0.520614
window14747

overview

Window 7

Location 24,572,297 – 24,572,394
Length 97
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 92.31
Mean single sequence MFE -20.47
Consensus MFE -15.78
Energy contribution -16.12
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.71
Structure conservation index 0.77
SVM decision value -0.03
SVM RNA-class probability 0.520614
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24572297 97 - 27905053
CUCAGGAGCACCCAAA-CAAUUUUGACGCAAUGAAAUGAUUUUGAUGAAAAAUUAAAAAGCAUUUCAAUCACGUCGAAAGUUUUCU-GACAUCACAA-AA
.(((((((.((.....-...((((((((...(((((((.(((((((.....)))))))..)))))))....)))))))))))))))-))........-.. ( -21.70)
>DroPse_CAF1 80761 97 - 1
UUCGACGGCACCCAAA-CAUUUUUGACGCAAUGAAAUGAUUUUGAUGAUAAAUUAAAAAGCAUUUCAAUCACGUCGAAAGUUUUCU-GACAUCACAA-AA
(((((((((...((((-....))))..))..(((((((.(((((((.....)))))))..)))))))....))))))).(((....-))).......-.. ( -21.70)
>DroEre_CAF1 75299 97 - 1
CUCAGGAGCACCCAAA-CAAUUUUGACGCAAUGAAAUGAUUUUGAUGAAAAAUUAAAAAGCAUUUCAAUCACGCCGAAAGUUUUCU-GACAUCACAA-AA
.((((((((...((((-....))))......(((((((.(((((((.....)))))))..))))))).....))(....)..))))-))........-.. ( -17.20)
>DroYak_CAF1 71995 97 - 1
CUCAGGAGCACCCAAA-CAAUUUUGACGCAAUGAAAUGAUUUUGAUGAAAAAUUAAAAAGCAUUUCAAUCACGUCGAAAGUUUUCU-GACAUCACAA-AA
.(((((((.((.....-...((((((((...(((((((.(((((((.....)))))))..)))))))....)))))))))))))))-))........-.. ( -21.70)
>DroAna_CAF1 72644 98 - 1
UUC--GAGCACCCGAGUCAUUUUUGACGCAAUGAAAUGAUUUUGAUGAAAAAUUAAAAAGCAUUUCAAUCACGUCGAAAGUUUGGUCGACAUCACAUCAA
.((--((....((((...((((((((((...(((((((.(((((((.....)))))))..)))))))....))))))))))))))))))........... ( -24.20)
>DroPer_CAF1 60194 97 - 1
UUCGACGGCACCCAAA-CAUUUUUGACGCAAUGAAAUGAUUUUGAUGAUAAAUUAAAAAGCAUUUCAAUCACGACGAAAGUUUUCU-GACAUCACAA-AA
((((.((((...((((-....))))..))..(((((((.(((((((.....)))))))..)))))))....)).)))).(((....-))).......-.. ( -16.30)
>consensus
CUCAGGAGCACCCAAA_CAAUUUUGACGCAAUGAAAUGAUUUUGAUGAAAAAUUAAAAAGCAUUUCAAUCACGUCGAAAGUUUUCU_GACAUCACAA_AA
....................((((((((...(((((((.(((((((.....)))))))..)))))))....))))))))..................... (-15.78 = -16.12 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:15 2006