Locus 9219

Sequence ID 3R_DroMel_CAF1
Location 24,571,447 – 24,571,548
Length 101
Max. P 0.550043
window14746

overview

Window 6

Location 24,571,447 – 24,571,548
Length 101
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 90.91
Mean single sequence MFE -29.17
Consensus MFE -25.23
Energy contribution -25.57
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.87
SVM decision value 0.03
SVM RNA-class probability 0.550043
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24571447 101 - 27905053
GCCCCACACCUCACACCCCACCUCCCAACCCC----ACCUACACUCACAUCAGCCAGAAAUGCCAGGCGACGGGACAGCCCGCCGCAGGUUUGAUGGGGGCCACA
(((((.((..(((.(((...............----................(.((....)).)..(((.((((....)))).))).))).)))))))))).... ( -29.50)
>DroSec_CAF1 69682 98 - 1
GCCCCCC-------ACCCCUCCUCCCAACCCCACCCACCUACACUCACAUCAGCCAGAAAUGCCAGGCGACGGGACGGCCCGCCGCAGGUUUGAUGGGGGCCACA
(((((((-------(..(((................................(.((....)).)..(((.((((....)))).))))))..))..)))))).... ( -29.70)
>DroSim_CAF1 71875 98 - 1
GCCCCAC-------ACCCCACCUCCCAACCCCACCCACCUACACUCACAUCAGCCAGAAAUGCCAGGCGACGGGACGGCCCGCCGCAGGUUUGAUGGGGGCCACA
(((((.(-------(.(..((((.............................(.((....)).)..(((.((((....)))).)))))))..).))))))).... ( -28.30)
>consensus
GCCCCAC_______ACCCCACCUCCCAACCCCACCCACCUACACUCACAUCAGCCAGAAAUGCCAGGCGACGGGACGGCCCGCCGCAGGUUUGAUGGGGGCCACA
............................(((((...((((............(.((....)).)..(((.((((....)))).)))))))....)))))...... (-25.23 = -25.57 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:14 2006