Locus 9216

Sequence ID 3R_DroMel_CAF1
Location 24,566,529 – 24,566,649
Length 120
Max. P 0.507031
window14742

overview

Window 2

Location 24,566,529 – 24,566,649
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.28
Mean single sequence MFE -44.18
Consensus MFE -23.39
Energy contribution -23.50
Covariance contribution 0.11
Combinations/Pair 1.19
Mean z-score -2.13
Structure conservation index 0.53
SVM decision value -0.05
SVM RNA-class probability 0.507031
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24566529 120 - 27905053
GACUUCCUUGGUCCGCGCACCUACCAGGUCACCUUCUUCAUCAGCUCCUACCUGCUGCCCCUGAUGAUCAUCAGCGGUCUCUACAUGCGCAUGAUCAUGCGGCUCUGGCGCCAGGGAACC
...(((((((((((((((......((((.............((((........))))..))))((((((((..(((((....)).)))..)))))))))))....))).))))))))).. ( -36.06)
>DroVir_CAF1 62425 120 - 1
GAUGUCCUUGAUCUGAGCACCUUUCAGGUGAGCUUCUUCAUAAGCUCGUAUCUGCUGCCCCUGAUGGUCAUCAGUGGAUUGUAUGUGCGCAUGAUAAUGCGGCUCUGGCAUCAGGGCACA
..(((((((((((((((((((.....)))((((((......))))))((((.(((..((.(((((....))))).))...))).))))((((....)))).)))).)).))))))).))) ( -44.80)
>DroPse_CAF1 74588 120 - 1
GAUCUGCUGGAUGCCAGCACCUUCCAGCUGAGCUUCUUCAUCAGCACGUAUCUGCUGCCCCUGAUGAUCAUCAGUGGACUGUAUGUGCGCAUGAUCACGCGUCUCUGGCGACAGGGCAGC
(((((((((((.((((((........)))).)).)).....))))).).))).(((((((.((.(((((((..(((.((.....)).))))))))))(((.......))).))))))))) ( -44.80)
>DroGri_CAF1 78328 120 - 1
GAUUUGCUCGAUUGGCUCACCUUCCAGGUGAGCUUCUUCAUUAGCUCCUAUCUGCUGCCACUGAUGGUCAUCAGUGGAUUGUACGUGCGCAUGAUCAUGCGCCUCUGGCGGCAGGGAAGC
.........((..((((((((.....))))))))...))....(((((...((((((((((((((....)))))).........(.((((((....)))))))...)))))))))).))) ( -50.10)
>DroMoj_CAF1 82481 120 - 1
GAAGUCCUCGAGCAGAGCACCUUCCAGGUGAGCUUCUUCAUCAGCUCCUACCUGCUGCCCCUGAUGGUCAUCAGCGGGCUGUACGUGCGCAUGAUCAUGCGCCUCUGGCACCAGGGCACC
...(((((.(.((((((.......((((((((((........)))))..)))))..(((((((((....))))).)))).......((((((....)))))))))).)).).)))))... ( -48.20)
>DroAna_CAF1 67119 120 - 1
GAGCUGCUUAGCCCACGCUCCUUCCAGAUAUCCUUCUUCGUCAGCUCCUACCUGCUGCCGCUGAUGAUCAUCAGUGGGCUGUACGUUCGUAUGAUAAUGCGCCUGUGGCACCAGGGCAGC
..(((((.((((((((.........(((......)))((((((((..(........)..))))))))......))))))))......(((((....)))))((((......))))))))) ( -41.10)
>consensus
GAUCUCCUUGAUCCGAGCACCUUCCAGGUGAGCUUCUUCAUCAGCUCCUACCUGCUGCCCCUGAUGAUCAUCAGUGGACUGUACGUGCGCAUGAUCAUGCGCCUCUGGCACCAGGGCACC
................((.(((.(((((.............((((........))))((.(((((....))))).))..........(((((....)))))..)))))....)))))... (-23.39 = -23.50 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:10 2006