Locus 9215

Sequence ID 3R_DroMel_CAF1
Location 24,561,626 – 24,561,720
Length 94
Max. P 0.607096
window14741

overview

Window 1

Location 24,561,626 – 24,561,720
Length 94
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 82.19
Mean single sequence MFE -22.13
Consensus MFE -13.55
Energy contribution -13.13
Covariance contribution -0.41
Combinations/Pair 1.14
Mean z-score -2.05
Structure conservation index 0.61
SVM decision value 0.15
SVM RNA-class probability 0.607096
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24561626 94 + 27905053
-GGCGACAACUGUUACACUCACAGUUAUGAUUAUUGUUAUUAUGAUAAUGCCAGCAGCAUGAGCAGUCCUUGUUGUUGUUAUUCUGCUCAGCUUU
-(((...((((((.......))))))...(((((..(....)..))))))))...(((.(((((((.................)))))))))).. ( -24.73)
>DroPse_CAF1 69736 74 + 1
CAACGACAACUGUUACACUCACAGUUAUGAUUAUUGUUAUUAUGAUAAUGUCAGCAG------------UGGUUGUUGUAAUUCCA---------
(((((((.(((((((((......((((((((.......))))))))..))).)))))------------).)))))))........--------- ( -18.30)
>DroSim_CAF1 61952 94 + 1
-GGCGACAACUGUUACACUCACAGUUAUGAUUAUUGUUAUUAUGAUAAUGUCAGCAGCAUGAGCAGUUCUCGUUGUUGUUAUUCUACUCGGCUUU
-((((((((((((.......))))))...(((((..(....)..))))))))(((((((((((.....)))).)))))))..........))).. ( -22.10)
>DroEre_CAF1 64326 94 + 1
-GGCGACAACUGUUACACUCACAGUUAUGAUUAUUGUUAUUAUGAUAAUGUCAGCAGCAUGAGCAGUCCUUGUUGUUGCUAUUCUGCUCGGCUUU
-.(((((((((((.......))))))...(((((..(....)..)))))))).))(((.(((((((.....((....))....)))))))))).. ( -25.70)
>DroYak_CAF1 61173 94 + 1
-GGCGACAACUGUUACACUCACAGUUAUGAUUAUUGUUAUUAUGAUAAUGUCAGCAGCAUGAGCAGUCCUUGUUGUUGUUAUUCUGCUCGGCUUU
-.(((((((((((.......))))))...(((((..(....)..)))))))).))(((.(((((((.................)))))))))).. ( -23.93)
>DroPer_CAF1 49213 74 + 1
CAACGACAACUGUUACACUCACAGUUAUGAUUAUUGUUAUUAUGAUAAUGUCGGCAG------------UGGUUGUUGUAAUUCCA---------
(((((((.((((((.....((..((((((((.......))))))))..))..)))))------------).)))))))........--------- ( -18.00)
>consensus
_GGCGACAACUGUUACACUCACAGUUAUGAUUAUUGUUAUUAUGAUAAUGUCAGCAGCAUGAGCAGUCCUUGUUGUUGUUAUUCUACUCGGCUUU
.((((((((((((.......)))))).((((.((((((.....))))))))))..................)))))).................. (-13.55 = -13.13 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:09 2006