Locus 9214

Sequence ID 3R_DroMel_CAF1
Location 24,561,039 – 24,561,131
Length 92
Max. P 0.857547
window14740

overview

Window 0

Location 24,561,039 – 24,561,131
Length 92
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.60
Mean single sequence MFE -33.50
Consensus MFE -14.01
Energy contribution -15.26
Covariance contribution 1.25
Combinations/Pair 1.14
Mean z-score -2.28
Structure conservation index 0.42
SVM decision value 0.81
SVM RNA-class probability 0.857547
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24561039 92 - 27905053
GCCCAAAUGUUGCAGUUUAUG-GCCAAGGCAUUGGCCAAAUUGC---------CUCUUGGCGUGCGGCAUAAUGGC--GACAAUAG-----------CCACAUUGUCUUGACAUC-----
(((...((((((((.....((-(((((....)))))))....((---------(....))).))))))))...)))--((((((..-----------....))))))........----- ( -35.80)
>DroVir_CAF1 56807 90 - 1
GCCGAAAUGUUUCAGUUUAUG-GCCACAGCGACAGCCAAAUUGC---------CUUUUGGCGUGUCGCAUAAUCGC--AGCA-------------AAGGACAUUGUCUUAACACA-----
((((((((......)))).))-))....((((((((((((....---------..)))))).))))))........--....-------------.(((((...)))))......----- ( -26.10)
>DroPse_CAF1 69072 95 - 1
GCCGGAAUGUUGCAGUUUAUG-GCCAGAGCAUUGGCCAAAUUGC---------CUCUUGGCGUGCGGCAUAAUGGC--GACAAGGG-----------GGACAUUGUCUUGACACUCAC--
((((..((((((((.....((-(((((....)))))))....((---------(....))).))))))))..))))--(((((.(.-----------...).)))))...........-- ( -39.50)
>DroWil_CAF1 64370 109 - 1
GCCGAAAUGUUGCAGUUUAUGGGCCAAAGCAUUGGCCAAAUUGCCACUCUUACCUCUUGGCGUGCGGCAUAAUGGCGCGACUAUGA-----------CGAUAUUGUCUUGACACACACAC
((((..((((((((.......((((((....)))))).....((((...........)))).))))))))..))))........((-----------((....))))............. ( -31.40)
>DroMoj_CAF1 74842 103 - 1
GCCGAAAUGUUGCAGUUUAUG-GCCAGAGCGAAAGCCAAAUUGC---------CUCUCGCCGUGUCGCUUCAUCGC--AGCAAUGGCCACAGCAAAAGGACAUUGUCUUUUCACC-----
((((...(((((((((.((((-((.(((((((........))).---------)))).))))))..))).....))--)))).)))).......(((((((...)))))))....----- ( -28.70)
>DroPer_CAF1 48535 95 - 1
GCCGGAAUGUUGCAGUUUAUG-GCCAGAGCAUUGGCCAAAUUGC---------CUCUUGGCGUGCGGCAUAAUGGC--GACAAGGG-----------GGACAUUGUCUUGACACUCAC--
((((..((((((((.....((-(((((....)))))))....((---------(....))).))))))))..))))--(((((.(.-----------...).)))))...........-- ( -39.50)
>consensus
GCCGAAAUGUUGCAGUUUAUG_GCCAGAGCAUUGGCCAAAUUGC_________CUCUUGGCGUGCGGCAUAAUGGC__GACAAUGG___________GGACAUUGUCUUGACACA_____
((((..((((((((((((........))))....(((((.................))))).))))))))..))))............................................ (-14.01 = -15.26 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:08 2006