| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,551,633 – 24,551,746 |
| Length | 113 |
| Max. P | 0.648220 |
| Location | 24,551,633 – 24,551,746 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 84.14 |
| Mean single sequence MFE | -39.58 |
| Consensus MFE | -28.66 |
| Energy contribution | -28.94 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.648220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24551633 113 - 27905053 GAGCACAGGACCUGCAGCUCGCCCAGGCUGGGGAUCAGAAGGGCCUGGCUGCGGCACAGUAAGUAGAUUAUGUGCUGUAAAGUGCAGAG--AACAUUAGGAUGAAAAACAAUAGA ..((((.....((((((((.((((...(((.....)))..))))..)))))))).((((((.(((...))).))))))...))))....--........................ ( -35.00) >DroPse_CAF1 58241 111 - 1 GAGCACAGGGCCUGCAGCUCGCUCAGGCUGGGUAUAAGGAGCGCCUGGCUGCGGCACAAUAAGUAGAUUAUGUGCUGCAAAGAACGGUGGUGCCAUUAGAGGUGGCAGCAA---- .(((.((((((((...((((((....)).))))....)).)).)))))))((((((((.(((.....))))))))))).........((.((((((.....)))))).)).---- ( -43.20) >DroSim_CAF1 51666 113 - 1 GAGCACAGGACCUGCAGUUCACCCAGGCUCGGGAUCAGGAGGGCUUGGCUGCGGCACAGUAAGUAGAUUAUGUGCUGCAAAGUGCAGAG--AACAUUAGCAUGAAAAACAAUAGA ..((...(..((((((.((...((((((((..........)))))))).(((((((((.(((.....)))))))))))))).))))).)--..)....))............... ( -34.60) >DroEre_CAF1 54221 113 - 1 GAGCACAGGGCCUGCAGCUCGCCCAGGCUGGGGAUCAGAAGUGCCUGGCUGCGGCACAGUAAGUAGAUUAUGUGCUGCAAAGUGCAGAG--AACAUUAGCAUGAGAAACAAUGGA ..((((.((((.........)))).(((..((.((.....)).))..)))((((((((.(((.....)))))))))))...))))....--........(((........))).. ( -37.30) >DroYak_CAF1 51006 113 - 1 GAGCACAGGGCCUGCAGCUCGCCCAGGCUGGGGAUCAGGAGGGCCUGGCUGCGGCACAGUAAGUAGAUUAUGUGCUGCAAAGUGCAGGG--AGCAUUAGCAUGAGAAACAAUAGA .(((.((((.(((.(.(.((.(((.....))))).).).))).)))))))((((((((.(((.....)))))))))))..(((((....--.))))).................. ( -41.40) >DroPer_CAF1 37650 111 - 1 GAGCACAGGGCCUGCAGCUCGCUCAGGCUGGGUAUAAGGAGCGCCUGGCUGCGGCACAAUAAGUAGAUUAUGUGCUGCAGAGAAAGGUAGUGCCAUUAGAGGUGGCAGCAA---- ....((..((((((.((....))))))))..)).......((((((..((((((((((.(((.....)))))))))))))....))))..((((((.....))))))))..---- ( -46.00) >consensus GAGCACAGGGCCUGCAGCUCGCCCAGGCUGGGGAUCAGGAGGGCCUGGCUGCGGCACAGUAAGUAGAUUAUGUGCUGCAAAGUGCAGAG__AACAUUAGCAUGAGAAACAAUAGA ..((((.((((.....))))..((((((..............)))))).(((((((((.(((.....))))))))))))..)))).............................. (-28.66 = -28.94 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:06 2006