Locus 9210

Sequence ID 3R_DroMel_CAF1
Location 24,549,311 – 24,549,414
Length 103
Max. P 0.688340
window14734

overview

Window 4

Location 24,549,311 – 24,549,414
Length 103
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 91.90
Mean single sequence MFE -23.55
Consensus MFE -17.75
Energy contribution -18.12
Covariance contribution 0.38
Combinations/Pair 1.07
Mean z-score -2.05
Structure conservation index 0.75
SVM decision value 0.32
SVM RNA-class probability 0.688340
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24549311 103 + 27905053
UGGCAUAUGCAU--AUGUAUAUACAUAUGUGUAUAGGCAUAUGGUGGCAUGUAUAUUGCAUAUUUUAAAUAUUUGAAGAGGACAGGACUAAUUGAAUUAAAAUUU
(((.(((((((.--((((((((.(((((((((....)))))).)))..))))))))))))))).)))...(((..(..((.......))..)..)))........ ( -20.60)
>DroSec_CAF1 47535 105 + 1
UGGCAUAUUCAUAUAUGCACAUACAUAUGUGUAGAGGCAUAUGGUGGCAUGUAUAUUGCAUAUUUUAAAUAUUUGAAGAGGCAAGGACUAAUUGAAUUAAAAUUU
......((((((((((((.(((.(((((((......)))))))))))))))))).((((...((((((....))))))..)))).........))))........ ( -23.50)
>DroSim_CAF1 49361 105 + 1
UGGCAUAUGCAUAUAUGUACAUACAUAUGUGUAUAGGCAUAUGGUGGCAUGUAUAUUGCAUAUUUUAAAUAUUUGAAGAGGCCGGGACUAAUUGAAUUAAAAUUU
.(((.(((((((((((((.(((.(((((((......)))))))))))))))))...))))))((((((....))))))..)))...................... ( -25.10)
>DroEre_CAF1 51909 105 + 1
UGGCACAUACAUACAUACAUGUACAUAUGUGCCUACGCAUAUGGUGGCAUGUAUAUUGCAUAUUUUAAAUAUUUGAAGAGGCCAGGACUAAUUGAAUUAAAAUUU
((((..........((((((((.((((((((....))))))))...))))))))........((((((....))))))..))))..................... ( -25.00)
>consensus
UGGCAUAUGCAUAUAUGCACAUACAUAUGUGUAUAGGCAUAUGGUGGCAUGUAUAUUGCAUAUUUUAAAUAUUUGAAGAGGCCAGGACUAAUUGAAUUAAAAUUU
..(((.....((((((((.....(((((((......)))))))...))))))))..)))..((((((...(((..(..((.......))..)..))))))))).. (-17.75 = -18.12 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:03 2006