| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,110,179 – 3,110,287 |
| Length | 108 |
| Max. P | 0.573915 |
| Location | 3,110,179 – 3,110,287 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.11 |
| Mean single sequence MFE | -25.40 |
| Consensus MFE | -21.20 |
| Energy contribution | -21.53 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.573915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3110179 108 + 27905053 UAAAAACAUUUUGAUCAACUUUUGUGUGUGAAAAAUUAAUUAUCACCACGUGGCAACACUGUCAACGUGCUUUGAUGCCAUUUUUUCCCACUCGUUUUUGCCCAGAAC------------ ........(((((..(((....((.(((.((((((.....(((((.(((((((((....)))).)))))...)))))....)))))).))).))...)))..))))).------------ ( -23.10) >DroSim_CAF1 3108 120 + 1 UAAAAACAUUUUGAUCAACUUUUGUGUGUGAAAAAUUAAUUAUCACCACGUGGCAACACUGUCAACGUGCUUUGAUGCCAUUUUUUCGCACUCGUUUUUGCCCAGAACUCGCAGUUCAGC (((((((..........((....))((((((((((.....(((((.(((((((((....)))).)))))...)))))....))))))))))..)))))))....((((.....))))... ( -30.00) >DroYak_CAF1 820 119 + 1 UAAAAACAUUUUGAUCAACUUUUGUGUGUGAAAAAUUAAUUAUCACCACGUGGCAACACUGUCAACGUGCUUUGAUGCUAUUU-UUCCCACUCGUUUUUGCCCAGUACUCGCAGUUCAGC (((((((..........((....))(((.(((((((....(((((.(((((((((....)))).)))))...)))))..))))-))).)))..))))))).................... ( -23.10) >consensus UAAAAACAUUUUGAUCAACUUUUGUGUGUGAAAAAUUAAUUAUCACCACGUGGCAACACUGUCAACGUGCUUUGAUGCCAUUUUUUCCCACUCGUUUUUGCCCAGAACUCGCAGUUCAGC (((((((..........((....))(((.((((((.....(((((.(((((((((....)))).)))))...)))))....)))))).)))..))))))).................... (-21.20 = -21.53 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:27 2006